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"~N,~N");c(c$,"getTranslation",function(a){a.x=this.m03;a.y=this.m13;a.z=this.m23},"JU.T3");c(c$,"getRotationScale",function(a){a.m00=this.m00;a.m01=this.m01;a.m02=this.m02;a.m10=this.m10;a.m11=this.m11;a.m12=this.m12;a.m20=this.m20;a.m21=this.m21;a.m22=this.m22},"JU.M3");c(c$,"setRotationScale",function(a){this.m00=a.m00;this.m01=a.m01;this.m02=a.m02;this.m10=a.m10;this.m11=a.m11;this.m12=a.m12;this.m20=a.m20;this.m21=a.m21;this.m22=a.m22},"JU.M3");c(c$,"setRowA",function(a,b){3>a&&this.setRow33(a,
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switch(a){case 0:b[3]=this.m30;break;case 1:b[3]=this.m31;break;case 2:b[3]=this.m32;break;case 3:b[0]=this.m03;b[1]=this.m13;b[2]=this.m23;b[3]=this.m33;break;default:this.err()}},"~N,~A");c(c$,"sub",function(a){this.sub33(a);this.m03-=a.m03;this.m13-=a.m13;this.m23-=a.m23;this.m30-=a.m30;this.m31-=a.m31;this.m32-=a.m32;this.m33-=a.m33},"JU.M4");c(c$,"transpose",function(){this.transpose33();var a=this.m03;this.m03=this.m30;this.m30=a;a=this.m13;this.m13=this.m31;this.m31=a;a=this.m23;this.m23=this.m32;
this.m32=a});c(c$,"invert",function(){var a=this.determinant4();if(0==a)return this;a=1/a;this.set(this.m11*(this.m22*this.m33-this.m23*this.m32)+this.m12*(this.m23*this.m31-this.m21*this.m33)+this.m13*(this.m21*this.m32-this.m22*this.m31),this.m21*(this.m02*this.m33-this.m03*this.m32)+this.m22*(this.m03*this.m31-this.m01*this.m33)+this.m23*(this.m01*this.m32-this.m02*this.m31),this.m31*(this.m02*this.m13-this.m03*this.m12)+this.m32*(this.m03*this.m11-this.m01*this.m13)+this.m33*(this.m01*this.m12-
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this.m10-this.m00*this.m12)+this.m30*(this.m03*this.m12-this.m02*this.m13),this.m02*(this.m13*this.m20-this.m10*this.m23)+this.m03*(this.m10*this.m22-this.m12*this.m20)+this.m00*(this.m12*this.m23-this.m13*this.m22),this.m13*(this.m20*this.m31-this.m21*this.m30)+this.m10*(this.m21*this.m33-this.m23*this.m31)+this.m11*(this.m23*this.m30-this.m20*this.m33),this.m23*(this.m00*this.m31-this.m01*this.m30)+this.m20*(this.m01*this.m33-this.m03*this.m31)+this.m21*(this.m03*this.m30-this.m00*this.m33),this.m33*
(this.m00*this.m11-this.m01*this.m10)+this.m30*(this.m01*this.m13-this.m03*this.m11)+this.m31*(this.m03*this.m10-this.m00*this.m13),this.m03*(this.m11*this.m20-this.m10*this.m21)+this.m00*(this.m13*this.m21-this.m11*this.m23)+this.m01*(this.m10*this.m23-this.m13*this.m20),this.m10*(this.m22*this.m31-this.m21*this.m32)+this.m11*(this.m20*this.m32-this.m22*this.m30)+this.m12*(this.m21*this.m30-this.m20*this.m31),this.m20*(this.m02*this.m31-this.m01*this.m32)+this.m21*(this.m00*this.m32-this.m02*this.m30)+
this.m22*(this.m01*this.m30-this.m00*this.m31),this.m30*(this.m02*this.m11-this.m01*this.m12)+this.m31*(this.m00*this.m12-this.m02*this.m10)+this.m32*(this.m01*this.m10-this.m00*this.m11),this.m00*(this.m11*this.m22-this.m12*this.m21)+this.m01*(this.m12*this.m20-this.m10*this.m22)+this.m02*(this.m10*this.m21-this.m11*this.m20));this.scale(a);return this});c(c$,"set",function(a,b,d,c,g,h,e,k,l,u,m,j,n,p,q,r){this.m00=a;this.m01=b;this.m02=d;this.m03=c;this.m10=g;this.m11=h;this.m12=e;this.m13=k;this.m20=
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function(a,b){b.set(this.m00*a.x+this.m01*a.y+this.m02*a.z+this.m03,this.m10*a.x+this.m11*a.y+this.m12*a.z+this.m13,this.m20*a.x+this.m21*a.y+this.m22*a.z+this.m23);return b},"JU.T3,JU.T3");c(c$,"setAsXYRotation",function(a){this.setIdentity();var b=Math.cos(a);a=Math.sin(a);this.m22=b;this.m23=-a;this.m32=a;this.m33=b;return this},"~N");c(c$,"setAsYZRotation",function(a){this.setIdentity();var b=Math.cos(a);a=Math.sin(a);this.m00=b;this.m03=-a;this.m30=a;this.m33=b;return this},"~N");c(c$,"setAsXZRotation",
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this.m00+"\t"+this.m01+"\t"+this.m02+"\t"+this.m03+"]\n  ["+this.m10+"\t"+this.m11+"\t"+this.m12+"\t"+this.m13+"]\n  ["+this.m20+"\t"+this.m21+"\t"+this.m22+"\t"+this.m23+"]\n  ["+this.m30+"\t"+this.m31+"\t"+this.m32+"\t"+this.m33+"] ]"});c(c$,"round",function(a){this.m00=this.rnd(this.m00,a);this.m01=this.rnd(this.m01,a);this.m02=this.rnd(this.m02,a);this.m03=this.rnd(this.m03,a);this.m10=this.rnd(this.m10,a);this.m11=this.rnd(this.m11,a);this.m12=this.rnd(this.m12,a);this.m13=this.rnd(this.m13,
a);this.m20=this.rnd(this.m20,a);this.m21=this.rnd(this.m21,a);this.m22=this.rnd(this.m22,a);this.m23=this.rnd(this.m23,a);this.m30=this.rnd(this.m30,a);this.m31=this.rnd(this.m31,a);this.m32=this.rnd(this.m32,a);this.m33=this.rnd(this.m33,a);return this},"~N");c(c$,"rnd",function(a,b){return Math.abs(a)<b?0:a},"~N,~N")});q("JU");r(["java.io.OutputStream","javajs.api.GenericOutputChannel"],"JU.OC","java.io.BufferedWriter $.ByteArrayOutputStream $.OutputStreamWriter java.lang.Float JU.Base64 $.SB".split(" "),
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JSV.common.ColorParameters.LIGHT_GRAY=this.getColor3(200,200,200);JSV.common.ColorParameters.DARK_GRAY=this.getColor3(80,80,80);JSV.common.ColorParameters.BLUE=this.getColor3(0,0,255);JSV.common.ColorParameters.WHITE=this.getColor3(255,255,255);this.elementColors=new java.util.Hashtable;this.setColor(JSV.common.ScriptToken.TITLECOLOR,JSV.common.ColorParameters.BLACK);this.setColor(JSV.common.ScriptToken.UNITSCOLOR,JSV.common.ColorParameters.RED);this.setColor(JSV.common.ScriptToken.SCALECOLOR,JSV.common.ColorParameters.BLACK);
this.setColor(JSV.common.ScriptToken.COORDINATESCOLOR,JSV.common.ColorParameters.RED);this.setColor(JSV.common.ScriptToken.GRIDCOLOR,JSV.common.ColorParameters.LIGHT_GRAY);this.setColor(JSV.common.ScriptToken.PLOTCOLOR,JSV.common.ColorParameters.BLUE);this.setColor(JSV.common.ScriptToken.PLOTAREACOLOR,JSV.common.ColorParameters.WHITE);this.setColor(JSV.common.ScriptToken.BACKGROUNDCOLOR,this.getColor3(192,192,192));this.setColor(JSV.common.ScriptToken.INTEGRALPLOTCOLOR,JSV.common.ColorParameters.RED);
this.setColor(JSV.common.ScriptToken.PEAKTABCOLOR,JSV.common.ColorParameters.RED);this.setColor(JSV.common.ScriptToken.HIGHLIGHTCOLOR,JSV.common.ColorParameters.DARK_GRAY);for(var a=0;8>a;a++)JSV.common.ColorParameters.defaultPlotColors[a]=this.getColorFromString(JSV.common.ColorParameters.defaultPlotColorNames[a]);this.plotColors=Array(8);System.arraycopy(JSV.common.ColorParameters.defaultPlotColors,0,this.plotColors,0,8)});c(c$,"setFor",function(a,b,d){null==b&&(b=this);d&&a.getPanelData().setBooleans(b,
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this.setColorFromString(b,d);break;case JSV.common.ScriptToken.TITLEFONTNAME:case JSV.common.ScriptToken.DISPLAYFONTNAME:c=this.getFontName(b,d)}null!=a&&null!=c&&a.setColorOrFont(this,b)},"JSV.common.PanelData,JSV.common.ScriptToken,~S");c(c$,"getElementColor",function(a){return this.elementColors.get(a)},"JSV.common.ScriptToken");c(c$,"setColor",function(a,b){null!=b&&this.elementColors.put(a,b);return b},"JSV.common.ScriptToken,javajs.api.GenericColor");c(c$,"copy",function(){return this.copy(this.name)});
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b.getXVal()?1:a.getXVal()<b.getXVal()?-1:0},"JSV.common.Coordinate,JSV.common.Coordinate");q("JSV.common");r(["JSV.common.CoordComparator"],"JSV.common.Coordinate",["java.lang.Double","java.util.Arrays","$.StringTokenizer","JU.DF","$.Lst"],function(){c$=p(function(){this.yVal=this.xVal=0;j(this,arguments)},JSV.common,"Coordinate");m(c$,function(){});c(c$,"set",function(a,b){this.xVal=a;this.yVal=b;return this},"~N,~N");c(c$,"getXVal",function(){return this.xVal});c(c$,"getYVal",function(){return this.yVal});
c(c$,"getXString",function(){return JU.DF.formatDecimalTrimmed(this.xVal,8)});c(c$,"getYString",function(){return JU.DF.formatDecimalTrimmed(this.yVal,8)});c(c$,"setXVal",function(a){this.xVal=a},"~N");c(c$,"setYVal",function(a){this.yVal=a},"~N");c(c$,"copy",function(){return(new JSV.common.Coordinate).set(this.xVal,this.yVal)});c(c$,"equals",function(a){return a.xVal==this.xVal&&a.yVal==this.yVal},"JSV.common.Coordinate");e(c$,"toString",function(){return"["+this.xVal+", "+this.yVal+"]"});c$.isYInRange=
c(c$,"isYInRange",function(a,b,d){return JSV.common.Coordinate.getMinY(a,0,a.length)>=b&&JSV.common.Coordinate.getMaxY(a,0,a.length)>=d},"~A,~N,~N");c$.normalise=c(c$,"normalise",function(a,b,d){var c=Array(a.length),g=JSV.common.Coordinate.getMinY(a,0,a.length);d=(JSV.common.Coordinate.getMaxY(a,0,a.length)-g)/(d-b);for(var h=0;h<a.length;h++)c[h]=(new JSV.common.Coordinate).set(a[h].getXVal(),(a[h].getYVal()-g)/d-b);return c},"~A,~N,~N");c$.reverse=c(c$,"reverse",function(a){for(var b=a.length,
d=0;d<b;d++){var c=a[d];a[d]=a[--b];a[b]=c}return a},"~A");c$.parseDSV=c(c$,"parseDSV",function(a,b,d){var c,g=c=0,h=new JU.Lst;for(a=new java.util.StringTokenizer(a," \t\n\r\f,;");a.hasMoreTokens();)c=a.nextToken().trim(),g=a.nextToken().trim(),c=Double.parseDouble(c),g=Double.parseDouble(g),c=(new JSV.common.Coordinate).set(c*b,g*d),h.addLast(c);b=Array(h.size());return h.toArray(b)},"~S,~N,~N");c$.deltaX=c(c$,"deltaX",function(a,b,d){return(a-b)/(d-1)},"~N,~N,~N");c$.removeScale=c(c$,"removeScale",
function(a,b,d){JSV.common.Coordinate.applyScale(a,1/b,1/d)},"~A,~N,~N");c$.applyScale=c(c$,"applyScale",function(a,b,d){if(1!=b||1!=d)for(var c=0;c<a.length;c++)a[c].setXVal(a[c].getXVal()*b),a[c].setYVal(a[c].getYVal()*d)},"~A,~N,~N");c$.applyShiftReference=c(c$,"applyShiftReference",function(a,b,d,c,g,h,e){if(!(b>a.length||0>b)){switch(e){case 0:g=a[a.length-b].getXVal()-g*h;break;case 1:g=d-g*h;break;case 2:g=c+g}for(d=0;d<a.length;d++)b=a[d],b.setXVal(b.getXVal()-g),a[d]=b}},"~A,~N,~N,~N,~N,~N,~N");
c$.getMinX=c(c$,"getMinX",function(a,b,d){for(var c=1.7976931348623157E308;b<d;b++){var g=a[b].getXVal();g<c&&(c=g)}return c},"~A,~N,~N");c$.getMinX=c(c$,"getMinX",function(a,b){for(var d=1.7976931348623157E308,c=0;c<a.size();c++){var g=a.get(c).getXYCoords(),g=JSV.common.Coordinate.getMinX(g,b.getStartingPointIndex(c),b.getEndingPointIndex(c));g<d&&(d=g)}return d},"JU.Lst,JSV.common.ViewData");c$.getMaxX=c(c$,"getMaxX",function(a,b,d){for(var c=-1.7976931348623157E308;b<d;b++){var g=a[b].getXVal();
g>c&&(c=g)}return c},"~A,~N,~N");c$.getMaxX=c(c$,"getMaxX",function(a,b){for(var d=-1.7976931348623157E308,c=0;c<a.size();c++){var g=a.get(c).getXYCoords(),g=JSV.common.Coordinate.getMaxX(g,b.getStartingPointIndex(c),b.getEndingPointIndex(c));g>d&&(d=g)}return d},"JU.Lst,JSV.common.ViewData");c$.getMinY=c(c$,"getMinY",function(a,b,d){for(var c=1.7976931348623157E308;b<d;b++){var g=a[b].getYVal();g<c&&(c=g)}return c},"~A,~N,~N");c$.getMinYUser=c(c$,"getMinYUser",function(a,b){for(var d=1.7976931348623157E308,
c=0;c<a.size();c++){var g=a.get(c).getUserYFactor(),h=a.get(c).getYRef(),e=a.get(c).getXYCoords(),g=(JSV.common.Coordinate.getMinY(e,b.getStartingPointIndex(c),b.getEndingPointIndex(c))-h)*g+h;g<d&&(d=g)}return d},"JU.Lst,JSV.common.ViewData");c$.getMaxY=c(c$,"getMaxY",function(a,b,d){for(var c=-1.7976931348623157E308;b<d;b++){var g=a[b].getYVal();g>c&&(c=g)}return c},"~A,~N,~N");c$.getMaxYUser=c(c$,"getMaxYUser",function(a,b){for(var d=-1.7976931348623157E308,c=0;c<a.size();c++){var g=a.get(c).getUserYFactor(),
h=a.get(c).getYRef(),e=a.get(c).getXYCoords(),g=(JSV.common.Coordinate.getMaxY(e,b.getStartingPointIndex(c),b.getEndingPointIndex(c))-h)*g+h;g>d&&(d=g)}return d},"JU.Lst,JSV.common.ViewData");c$.getYValueAt=c(c$,"getYValueAt",function(a,b){var d=JSV.common.Coordinate.getNearestIndexForX(a,b);if(0==d||d==a.length)return NaN;var c=a[d].getXVal(),g=a[d-1].getXVal(),h=a[d].getYVal(),d=a[d-1].getYVal();return c==g?h:d+(h-d)/(c-g)*(b-g)},"~A,~N");c$.intoRange=c(c$,"intoRange",function(a,b,d){return Math.max(Math.min(a,
d),b)},"~N,~N,~N");c$.getNearestIndexForX=c(c$,"getNearestIndexForX",function(a,b){var d=(new JSV.common.Coordinate).set(b,0),d=java.util.Arrays.binarySearch(a,d,JSV.common.Coordinate.c);0>d&&(d=-1-d);return 0>d?0:d>a.length-1?a.length-1:d},"~A,~N");c$.findXForPeakNearest=c(c$,"findXForPeakNearest",function(a,b,d){b=JSV.common.Coordinate.getNearestIndexForX(a,b);for(d=d?-1:1;b<a.length-1&&0<d*(a[b+1].yVal-a[b].yVal);)b++;for(;1<=b&&0<d*(a[b-1].yVal-a[b].yVal);)b--;return 0==b||b==a.length-1?a[b].xVal:
JSV.common.Coordinate.parabolicInterpolation(a,b)},"~A,~N,~B");c$.parabolicInterpolation=c(c$,"parabolicInterpolation",function(a,b){var d=a[b-1].yVal,c=a[b+1].yVal;return a[b].xVal+(d-c)/2/(d-2*a[b].yVal+c)*(a[b+1].xVal-a[b].xVal)},"~A,~N");c$.getPickedCoordinates=c(c$,"getPickedCoordinates",function(a,b,d,c){if(null==b)return!1;var g=b.getXVal();d.setXVal(g);d.setYVal(b.getYVal());if(null==c)return!0;b=JSV.common.Coordinate.getNearestIndexForX(a,g);c.setXVal(a[b].getXVal());c.setYVal(a[b].getYVal());
return!0},"~A,JSV.common.Coordinate,JSV.common.Coordinate,JSV.common.Coordinate");c$.shiftX=c(c$,"shiftX",function(a,b){for(var d=a.length;0<=--d;)a[d].xVal+=b},"~A,~N");c$.getNearestXWithYAbove=c(c$,"getNearestXWithYAbove",function(a,b,d,c,g){b=JSV.common.Coordinate.getNearestIndexForX(a,b);var h=c?-1:1;if(g)for(;b<a.length&&0>h*(a[b].yVal-d);)b++;else for(;0<=b&&0>h*(a[b].yVal-d);)b--;return-1==b||b==a.length?NaN:JSV.common.Coordinate.findXForPeakNearest(a,a[b].getXVal(),c)},"~A,~N,~N,~B,~B");c$.c=
c$.prototype.c=new JSV.common.CoordComparator});q("JSV.common");r(["java.lang.Enum"],"JSV.common.ExportType",null,function(){c$=s(JSV.common,"ExportType",Enum);c$.getType=c(c$,"getType",function(a){a=a.toUpperCase();if(a.equalsIgnoreCase("Original..."))return JSV.common.ExportType.SOURCE;if(a.startsWith("XML"))return JSV.common.ExportType.AML;for(var b,d=0,c=JSV.common.ExportType.values();d<c.length&&((b=c[d])||1);d++)if(b.name().equals(a))return b;return JSV.common.ExportType.UNK},"~S");c$.isExportMode=
c(c$,"isExportMode",function(a){return JSV.common.ExportType.getType(a)!==JSV.common.ExportType.UNK},"~S");n(c$,"UNK",0,[]);n(c$,"SOURCE",1,[]);n(c$,"DIF",2,[]);n(c$,"FIX",3,[]);n(c$,"SQZ",4,[]);n(c$,"PAC",5,[]);n(c$,"XY",6,[]);n(c$,"DIFDUP",7,[]);n(c$,"PNG",8,[]);n(c$,"JPG",9,[]);n(c$,"SVG",10,[]);n(c$,"SVGI",11,[]);n(c$,"CML",12,[]);n(c$,"AML",13,[]);n(c$,"PDF",14,[])});q("JSV.common");r("JSV.common.XYScaleConverter java.util.Hashtable JU.BS $.Lst JSV.common.Coordinate JSV.dialog.JSVDialog".split(" "),
"JSV.common.GraphSet","java.lang.Boolean $.Double $.Float JU.DF $.PT JSV.common.Annotation $.ColorParameters $.ColoredAnnotation $.ImageView $.Integral $.IntegralData $.Measurement $.MeasurementData $.PanelData $.Parameters $.PeakData $.PeakPickEvent $.PlotWidget $.ScaleData $.ScriptToken $.Spectrum $.ViewData JU.Logger".split(" "),function(){c$=p(function(){this.gs2dLinkedY=this.gs2dLinkedX=null;this.cur1D2Locked=!1;this.spectra=this.highlights=null;this.allowStacking=this.isSplittable=!0;this.widgets=
this.graphsTemp=this.pendingIntegral=this.pendingMeasurement=this.lastAnnotation=this.selectedSpectrumIntegrals=this.selectedSpectrumMeasurements=this.annotations=null;this.haveSingleYScale=this.isLinked=!1;this.iSpectrumClicked=this.iSpectrumMovedTo=0;this.iSpectrumSelected=-1;this.stackSelected=!1;this.viewData=this.bsSelected=null;this.reversePlot=!1;this.nSplit=1;this.yStackOffsetPercent=0;this.showAllStacked=!0;this.pd=this.imageView=this.viewList=null;this.sticky2Dcursor=!1;this.nSpectra=0;
this.fracY=this.fracX=1;this.fY0=this.fX0=0;this.cur2Dy=this.cur1D2x2=this.cur1D2x1=this.cur2Dx1=this.cur2Dx0=this.pin2Dy01=this.pin2Dx01=this.pin2Dy1=this.pin2Dy0=this.pin2Dx1=this.pin2Dx0=this.pin1Dy01=this.pin1Dx01=this.pin1Dy1=this.pin1Dy0=this.pin1Dx1=this.pin1Dx0=this.zoomBox2D=this.zoomBox1D=null;this.xPixels0=this.xPixel10=this.yPixels=this.xPixels=this.yPixel000=this.yPixel11=this.xPixel11=this.yPixel00=this.xPixel00=this.yHArrows=this.xHArrows=this.xVArrows=this.yPixel1=this.xPixel1=this.yPixel0=
this.xPixel0=0;this.allowStackedYScale=!0;this.drawXAxisLeftToRight=!1;this.xAxisLeftToRight=!0;this.iPreviousSpectrumClicked=-1;this.zoomEnabled=this.$haveSelectedSpectrum=!1;this.currentZoomIndex=0;this.lastClickX=NaN;this.lastPixelX=2147483647;this.bottom=this.left=this.top=this.right=this.width=this.height=0;this.coordTemp=this.piMouseOver=null;this.FONT_PLAIN=0;this.FONT_BOLD=1;this.FONT_ITALIC=2;this.is2DSpectrum=!1;this.selectedIntegral=this.selectedMeasurement=null;this.lastXMax=NaN;this.lastSpecClicked=
-1;this.inPlotMove=!1;this.xPixelMovedTo2=this.xPixelMovedTo=-1;this.xValueMovedTo=this.yValueMovedTo=0;this.haveLeftRightArrows=!1;this.yPixelPlot1=this.yPixelPlot0=this.xPixelPlot0=this.xPixelPlot1=0;this.nextClickForSetPeak=null;this.splitterY=this.splitterX=this.closerY=this.closerX=0;this.mapX=null;K("JSV.common.GraphSet.Highlight")||JSV.common.GraphSet.$GraphSet$Highlight$();this.triggered=!0;this.nextClickMode=this.lastIntDragX=0;this.gMain=this.g2d=this.plotColors=this.image2D=this.jsvp=this.aIntegrationRatios=
this.dialogs=null;this.COLOR_GREY=-3;this.COLOR_BLACK=-2;this.COLOR_INTEGRAL=-1;j(this,arguments)},JSV.common,"GraphSet",null,JSV.common.XYScaleConverter);F(c$,function(){this.highlights=new JU.Lst;this.spectra=new JU.Lst;this.graphsTemp=new JU.Lst;this.bsSelected=new JU.BS;this.coordTemp=new JSV.common.Coordinate;this.mapX=new java.util.Hashtable});m(c$,function(a){this.pd=a;this.jsvp=a.jsvp;this.g2d=a.g2d},"JSV.common.PanelData");c(c$,"setSpectrumMovedTo",function(a){return this.iSpectrumMovedTo=
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d.dispose()}this.dialogs=null});c(c$,"isDrawNoSpectra",function(){return-2147483648==this.iSpectrumSelected});c(c$,"getFixedSelectedSpectrumIndex",function(){return Math.max(this.iSpectrumSelected,0)});c(c$,"getSpectrum",function(){return this.getSpectrumAt(this.getFixedSelectedSpectrumIndex()).getCurrentSubSpectrum()});c(c$,"getSpectrumAt",function(a){return this.spectra.get(a)},"~N");c(c$,"getSpectrumIndex",function(a){for(var b=this.spectra.size();0<=--b;)if(this.spectra.get(b)===a)return b;return-1},
"JSV.common.Spectrum");c(c$,"addSpec",function(a){this.spectra.addLast(a);this.nSpectra++},"JSV.common.Spectrum");c(c$,"splitStack",function(a){a&&this.isSplittable?(this.nSplit=this.nSpectra,this.showAllStacked=!1,this.setSpectrumClicked(this.iSpectrumSelected),this.pd.currentSplitPoint=this.iSpectrumSelected):(this.nSplit=1,this.showAllStacked=this.allowStacking&&!a,this.setSpectrumClicked(this.iSpectrumSelected));this.stackSelected=!1;JSV.common.GraphSet.setFractionalPositions(this.pd,this.pd.graphSets,
JSV.common.PanelData.LinkMode.NONE);this.pd.setTaintedAll()},"~B");c(c$,"setPositionForFrame",function(a){0>a&&(a=0);var b=this.height-50;this.xPixel00=x(this.width*this.fX0);this.xPixel11=x(this.xPixel00+this.width*this.fracX-1);this.xHArrows=this.xPixel00+25;this.xVArrows=this.xPixel11-x(this.right/2);this.xPixel0=this.xPixel00+x(this.left*(1-this.fX0));this.xPixel10=this.xPixel1=this.xPixel11-this.right;this.xPixels0=this.xPixels=this.xPixel1-this.xPixel0+1;this.yPixel000=(0==this.fY0?25:0)+x(this.height*
this.fY0);this.yPixel00=this.yPixel000+x(b*this.fracY*a);this.yPixel11=this.yPixel00+x(b*this.fracY)-1;this.yHArrows=this.yPixel11-12;this.yPixel0=this.yPixel00+x(this.top/2);this.yPixel1=this.yPixel11-x(this.bottom/2);this.yPixels=this.yPixel1-this.yPixel0+1;null!=this.imageView&&this.is2DSpectrum&&(this.setImageWindow(),this.pd.display1D?(this.xPixels=x(Math.floor(0.8*(this.pd.display1D?1*(this.xPixels0-this.imageView.xPixels)/this.xPixels0:1)*this.xPixels0)),this.xPixel1=this.xPixel0+this.xPixels-
1):(this.xPixels=0,this.xPixel1=this.imageView.xPixel0-30))},"~N");c(c$,"hasPoint",function(a,b){return a>=this.xPixel00&&a<=this.xPixel11&&b>=this.yPixel000&&b<=this.yPixel11*this.nSplit},"~N,~N");c(c$,"isInPlotRegion",function(a,b){return a>=this.xPixel0&&a<=this.xPixel1&&b>=this.yPixel0&&b<=this.yPixel1},"~N,~N");c(c$,"getSplitPoint",function(a){return Math.max(0,Math.min(x((a-this.yPixel000)/(this.yPixel11-this.yPixel00)),this.nSplit-1))},"~N");c(c$,"isSplitWidget",function(a,b){return this.isFrameBox(a,
b,this.splitterX,this.splitterY)},"~N,~N");c(c$,"isCloserWidget",function(a,b){return this.isFrameBox(a,b,this.closerX,this.closerY)},"~N,~N");c(c$,"initGraphSet",function(a,b){null==JSV.common.GraphSet.veryLightGrey&&(JSV.common.GraphSet.veryLightGrey=this.g2d.getColor3(200,200,200));this.setPlotColors(JSV.common.ColorParameters.defaultPlotColors);this.xAxisLeftToRight=this.getSpectrumAt(0).shouldDisplayXAxisIncreasing();this.setDrawXAxis();var d=E(this.nSpectra,0),c=E(this.nSpectra,0);this.bsSelected.setBits(0,
this.nSpectra);this.allowStackedYScale=!0;0>=b&&(b=2147483647);this.isSplittable=1<this.nSpectra;this.showAllStacked=(this.allowStacking=this.spectra.get(0).isStackable())&&1<this.nSpectra;for(var g=0;g<this.nSpectra;g++){var h=this.spectra.get(g).getXYCoords().length-1;d[g]=JSV.common.Coordinate.intoRange(a,0,h);c[g]=JSV.common.Coordinate.intoRange(b,0,h);this.allowStackedYScale=(new Boolean(this.allowStackedYScale&(this.spectra.get(g).getYUnits().equals(this.spectra.get(0).getYUnits())&&this.spectra.get(g).getUserYFactor()==
this.spectra.get(0).getUserYFactor()))).valueOf()}this.getView(0,0,0,0,d,c,null,null);this.viewList=new JU.Lst;this.viewList.addLast(this.viewData)},"~N,~N");c(c$,"getView",function(a,b,d,c,g,h,e,k){var l=0==this.graphsTemp.size()?this.spectra:this.graphsTemp,u=this.getSpectrumAt(0).getSubSpectra(),m=null==u||2==u.size()&&u.get(1).isImaginary(),n=!this.getSpectrumAt(0).is1D();m&&d==c?l=this.spectra:d==c&&(this.viewData=new JSV.common.ViewData(u,d,c,this.getSpectrum().isContinuous()),l=null);null!=
l&&(this.viewData=new JSV.common.ViewData(l,d,c,g,h,this.getSpectrumAt(0).isContinuous(),n),a!=b&&this.getScale().setXRange(a,b));null!=e&&(JSV.common.ScaleData.copyScaleFactors(e,this.viewData.getScaleData()),null!=k&&JSV.common.ScaleData.copyYScales(k,this.viewData.getScaleData()),this.getCurrentView())},"~N,~N,~N,~N,~A,~A,~A,~A");c(c$,"isNearby",function(a,b,d,c){var g=a.getXVal(),h=d.toPixelX(g);a=this.toPixelY(a.getYVal());g=b.getXVal();d=d.toPixelX(g);b=this.toPixelY(b.getYVal());return Math.abs(h-
d)+Math.abs(a-b)<c},"JSV.common.Coordinate,JSV.common.Coordinate,JSV.common.XYScaleConverter,~N");c(c$,"setReversePlot",function(a){(this.reversePlot=a)&&this.closeDialogsExcept(JSV.common.Annotation.AType.NONE);this.setDrawXAxis()},"~B");c(c$,"setDrawXAxis",function(){this.drawXAxisLeftToRight=(new Boolean(this.xAxisLeftToRight^this.reversePlot)).valueOf();for(var a=0;a<this.spectra.size();a++)this.spectra.get(a).setExportXAxisDirection(this.drawXAxisLeftToRight)});c(c$,"isInTopBar",function(a,b){return a==
this.fixX(a)&&b>this.pin1Dx0.yPixel0-2&&b<this.pin1Dx0.yPixel1},"~N,~N");c(c$,"isInTopBar2D",function(a,b){return null!=this.imageView&&a==this.imageView.fixX(a)&&b>this.pin2Dx0.yPixel0-2&&b<this.pin2Dx0.yPixel1},"~N,~N");c(c$,"isInRightBar",function(a,b){return b==this.fixY(b)&&a>this.pin1Dy0.xPixel1&&a<this.pin1Dy0.xPixel0+2},"~N,~N");c(c$,"isInRightBar2D",function(a,b){return null!=this.imageView&&b==this.fixY(b)&&a>this.pin2Dy0.xPixel1&&a<this.pin2Dy0.xPixel0+2},"~N,~N");c(c$,"toX0",function(a){return this.viewList.get(0).getScale().toX0(this.fixX(a),
this.xPixel0,this.xPixel1,this.drawXAxisLeftToRight)},"~N");c(c$,"toY0",function(a){return this.viewList.get(0).getScale().toY0(this.fixY(a),this.yPixel0,this.yPixel1)},"~N");e(c$,"toX",function(a){return null!=this.imageView&&this.imageView.isXWithinRange(a)?this.imageView.toX(a):this.getScale().toX(this.fixX(a),this.xPixel1,this.drawXAxisLeftToRight)},"~N");e(c$,"toY",function(a){return this.getScale().toY(a,this.yPixel0)},"~N");c(c$,"toPixelX",function(a){return this.getScale().toPixelX(a,this.xPixel0,
this.xPixel1,this.drawXAxisLeftToRight)},"~N");c(c$,"toPixelY",function(a){return this.getScale().toPixelY(a,this.yPixel1)},"~N");c(c$,"toPixelX0",function(a){return this.viewList.get(0).getScale().toPixelX0(a,this.xPixel0,this.xPixel1,this.drawXAxisLeftToRight)},"~N");c(c$,"toPixelY0",function(a){return this.fixY(this.viewList.get(0).getScale().toPixelY0(a,this.yPixel0,this.yPixel1))},"~N");c(c$,"fixX",function(a){return JSV.common.Coordinate.intoRange(a,this.xPixel0,this.xPixel1)},"~N");c(c$,"fixY",
function(a){return JSV.common.Coordinate.intoRange(a,this.yPixel0,this.yPixel1)},"~N");c(c$,"getXPixel0",function(){return this.xPixel0});c(c$,"getXPixels",function(){return this.xPixels});e(c$,"getYPixels",function(){return this.yPixels});c(c$,"getScale",function(){return this.viewData.getScale()});c(c$,"toPixelYint",function(a){return this.yPixel1-x(Double.isNaN(a)?-2147483648:this.yPixels*a)},"~N");c(c$,"findAnnotation2D",function(a){for(var b=this.annotations.size();0<=--b;){var d=this.annotations.get(b);
if(this.isNearby(d,a,this.imageView,10))return d}return null},"JSV.common.Coordinate");c(c$,"addAnnotation",function(a,b){null==this.annotations&&(this.annotations=new JU.Lst);for(var d=!1,c=this.annotations.size();0<=--c;)if(a.is2D?this.isNearby(this.annotations.get(c),a,this.imageView,10):a.equals(this.annotations.get(c)))d=!0,this.annotations.removeItemAt(c);0<a.text.length&&(!d||!b)&&this.annotations.addLast(a)},"JSV.common.Annotation,~B");c(c$,"setImageWindow",function(){this.imageView.setPixelWidthHeight(x((this.pd.display1D?
0.6:1)*this.xPixels0),this.yPixels);this.imageView.setXY0(this.getSpectrumAt(0),x(Math.floor(this.xPixel10-this.imageView.xPixels)),this.yPixel0)});c(c$,"findNearestMaxMin",function(){if(1<this.nSpectra&&0>this.iSpectrumClicked)return!1;this.xValueMovedTo=this.getSpectrum().findXForPeakNearest(this.xValueMovedTo);this.setXPixelMovedTo(this.xValueMovedTo,1.7976931348623157E308,0,0);return!Double.isNaN(this.xValueMovedTo)});c(c$,"setXPixelMovedTo",function(a,b,d,c){1.7976931348623157E308==a&&1.7976931348623157E308==
b?(this.xPixelMovedTo=d,this.xPixelMovedTo2=c,this.isLinked&&this.sticky2Dcursor&&this.pd.setlinkedXMove(this,this.toX(this.xPixelMovedTo),!1)):(1.7976931348623157E308!=a&&(this.xPixelMovedTo=this.toPixelX(a),this.fixX(this.xPixelMovedTo)!=this.xPixelMovedTo&&(this.xPixelMovedTo=-1),this.xPixelMovedTo2=-1,1E10!=a&&this.setSpectrumClicked(this.getFixedSelectedSpectrumIndex())),1.7976931348623157E308!=b&&(this.xPixelMovedTo2=this.toPixelX(b)))},"~N,~N,~N,~N");c(c$,"processPendingMeasurement",function(a,
b,d){if(!this.isInPlotRegion(a,b)||this.is2dClick(a,b))this.pendingMeasurement=null;else{var c=this.toX(a),g=this.toY(b),h=c;switch(d){case 0:this.pendingMeasurement.setPt2(this.toX(a),this.toY(b));break;case 3:case 2:if(0>this.iSpectrumClicked)break;var e=this.spectra.get(this.iSpectrumClicked);this.setScale(this.iSpectrumClicked);3!=d&&(d=this.findMeasurement(this.selectedSpectrumMeasurements,a,b,1),null!=d?(c=d.getXVal(),g=d.getYVal()):null!=(d=this.findMeasurement(this.selectedSpectrumMeasurements,
a,b,2))?(c=d.getXVal2(),g=d.getYVal2()):c=this.getNearestPeak(e,c,g));this.pendingMeasurement=(new JSV.common.Measurement).setM1(c,g,e);this.pendingMeasurement.setPt2(h,g);this.pd.setTaintedAll();this.pd.repaint();break;case 1:case -2:case -3:for(h=null!=this.pendingMeasurement&&this.isVisible(this.getDialog(JSV.common.Annotation.AType.Measurements,-1));h;){this.setScale(this.getSpectrumIndex(this.pendingMeasurement.spec));if(3!=d){if(!this.findNearestMaxMin()){h=!1;break}a=this.xPixelMovedTo}c=this.toX(a);
g=this.toY(b);this.pendingMeasurement.setPt2(c,g);if(0==this.pendingMeasurement.text.length){h=!1;break}this.setMeasurement(this.pendingMeasurement);if(1!=d){h=!1;break}this.setSpectrumClicked(this.getSpectrumIndex(this.pendingMeasurement.spec));this.pendingMeasurement=(new JSV.common.Measurement).setM1(c,g,this.pendingMeasurement.spec);break}h||(this.pendingMeasurement=null);this.pd.setTaintedAll();this.pd.repaint();break;case 5:this.findNearestMaxMin()?(a=this.getFixedSelectedSpectrumIndex(),Double.isNaN(this.lastXMax)||
this.lastSpecClicked!=a||null==this.pendingMeasurement?(this.lastXMax=this.xValueMovedTo,this.lastSpecClicked=a,this.pendingMeasurement=(new JSV.common.Measurement).setM1(this.xValueMovedTo,this.yValueMovedTo,this.spectra.get(a))):(this.pendingMeasurement.setPt2(this.xValueMovedTo,this.yValueMovedTo),0<this.pendingMeasurement.text.length&&this.setMeasurement(this.pendingMeasurement),this.pendingMeasurement=null,this.lastXMax=NaN)):this.lastXMax=NaN}}},"~N,~N,~N");c(c$,"checkIntegralNormalizationClick",
function(a,b){if(null==this.selectedSpectrumIntegrals)return!1;var d=this.findMeasurement(this.selectedSpectrumIntegrals,a,b,-5);if(null==d)return!1;this.selectedIntegral=d;this.pd.normalizeIntegral();this.updateDialog(JSV.common.Annotation.AType.Integration,-1);this.setSpectrumClicked(this.getSpectrumIndex(d.spec));return!0},"~N,~N");c(c$,"getNearestPeak",function(a,b,d){var c=JSV.common.Coordinate.getNearestXWithYAbove(a.getXYCoords(),b,d,a.isInverted(),!1);a=JSV.common.Coordinate.getNearestXWithYAbove(a.getXYCoords(),
b,d,a.isInverted(),!0);return Double.isNaN(c)?a:Double.isNaN(a)?c:Math.abs(c-b)<Math.abs(a-b)?c:a},"JSV.common.Spectrum,~N,~N");c(c$,"findMeasurement",function(a,b,d,c){if(null==a||0==a.size())return null;if(0==c){var g=this.findMeasurement(a,b,d,-1);return null!=g||v(a.get(0),JSV.common.Integral)?g:this.findMeasurement(a,b,d,-2)}for(var h=a.size();0<=--h;){var g=a.get(h),e,k,l,u;v(g,JSV.common.Integral)?(e=k=this.toPixelX(g.getXVal2()),l=this.toPixelYint(g.getYVal()),u=this.toPixelYint(g.getYVal2())):
(e=this.toPixelX(g.getXVal()),k=this.toPixelX(g.getXVal2()),l=u=-2==c?this.yPixel1-2:this.toPixelY(g.getYVal()));switch(c){case 1:if(4>Math.abs(b-e)+Math.abs(d-l))return g;break;case 2:if(4>Math.abs(b-k)+Math.abs(d-u))return g;break;case -5:l=u=x((l+u)/2),k=e+20;default:case -1:case -2:if(JSV.common.GraphSet.isOnLine(b,d,e,l,k,u))return g}}return null},"JSV.common.MeasurementData,~N,~N,~N");c(c$,"setMeasurement",function(a){var b=this.getSpectrumIndex(a.spec),d=this.getDialog(JSV.common.Annotation.AType.Measurements,
b);null==d&&this.addDialog(b,JSV.common.Annotation.AType.Measurements,d=new JSV.common.MeasurementData(JSV.common.Annotation.AType.Measurements,a.spec));d.getData().addLast(a.copyM());this.updateDialog(JSV.common.Annotation.AType.Measurements,-1)},"JSV.common.Measurement");c(c$,"checkArrowUpDownClick",function(a,b){var d=!1,c=this.isArrowClick(a,b,3)?JSV.common.GraphSet.RT2:this.isArrowClick(a,b,4)?1/JSV.common.GraphSet.RT2:0;if(0!=c){1<this.nSplit&&this.setSpectrumSelected(this.iSpectrumMovedTo);
if((1==this.nSpectra||0<=this.iSpectrumSelected)&&this.spectra.get(this.getFixedSelectedSpectrumIndex()).isTransmittance())c=1/c;this.viewData.scaleSpectrum(null==this.imageView?this.iSpectrumSelected:-2,c);d=!0}else this.isArrowClick(a,b,-1)&&(this.resetViewCompletely(),d=!0);d&&(null!=this.imageView&&(this.update2dImage(!1),this.resetPinsFromView()),this.pd.setTaintedAll());return d},"~N,~N");c(c$,"resetViewCompletely",function(){this.clearViews();this.showAllStacked&&!this.stackSelected&&this.closeDialogsExcept(JSV.common.Annotation.AType.NONE);
this.viewData.resetScaleFactors();this.updateDialogs()});c(c$,"checkArrowLeftRightClick",function(a,b){if(this.haveLeftRightArrows){var d=this.isArrowClick(a,b,1)?-1:this.isArrowClick(a,b,2)?1:0;if(0!=d)return this.setSpectrumClicked((this.iSpectrumSelected+d)%this.nSpectra),!0;if(this.isArrowClick(a,b,0)){if(this.showAllStacked)return this.showAllStacked=!1,this.setSpectrumClicked(this.getFixedSelectedSpectrumIndex()),!0;this.showAllStacked=this.allowStacking;this.setSpectrumSelected(-1);this.stackSelected=
!1}}return!1},"~N,~N");c(c$,"isArrowClick",function(a,b,d){switch(d){case 3:case 4:case -1:return d=x((this.yPixel00+this.yPixel11)/2)+15*(3==d?-1:4==d?1:0),10>Math.abs(this.xVArrows-a)&&10>Math.abs(d-b);case 1:case 2:case 0:return d=this.xHArrows+15*(1==d?-1:2==d?1:0),10>Math.abs(d-a)&&10>Math.abs(this.yHArrows-b)}return!1},"~N,~N,~N");c(c$,"setWidgetValueByUser",function(a){var b;b=a===this.cur2Dy?""+this.imageView.toSubspectrumIndex(a.yPixel0):a===this.pin1Dx01?""+Math.min(this.pin1Dx0.getXVal(),
this.pin1Dx1.getXVal())+" - "+Math.max(this.pin1Dx0.getXVal(),this.pin1Dx1.getXVal()):a===this.pin1Dy01?""+Math.min(this.pin1Dy0.getYVal(),this.pin1Dy1.getYVal())+" - "+Math.max(this.pin1Dy0.getYVal(),this.pin1Dy1.getYVal()):a===this.pin2Dx01?""+Math.min(this.pin2Dx0.getXVal(),this.pin2Dx1.getXVal())+" - "+Math.max(this.pin2Dx0.getXVal(),this.pin2Dx1.getXVal()):a===this.pin2Dy01?""+x(Math.min(this.pin2Dy0.getYVal(),this.pin2Dy1.getYVal()))+" - "+x(Math.max(this.pin2Dy0.getYVal(),this.pin2Dy1.getYVal())):
""+a.getValue();b=this.pd.getInput("New value?","Set Slider",b);if(null!=b){b=b.trim();try{if(a===this.pin1Dx01||a===this.pin1Dy01||a===this.pin2Dx01||a===this.pin2Dy01){var d=b.indexOf("-",1);if(!(0>d)){var c=Double.$valueOf(b.substring(0,d)).doubleValue(),g=Double.$valueOf(b.substring(d+1)).doubleValue();a===this.pin1Dx01?this.doZoom(c,this.pin1Dy0.getYVal(),g,this.pin1Dy1.getYVal(),!0,!1,!1,!0,!0):a===this.pin1Dy01?this.doZoom(this.pin1Dx0.getXVal(),c,this.pin1Dx1.getXVal(),g,null==this.imageView,
null==this.imageView,!1,!1,!0):a===this.pin2Dx01?(this.imageView.setView0(this.imageView.toPixelX0(c),this.pin2Dy0.yPixel0,this.imageView.toPixelX0(g),this.pin2Dy1.yPixel0),this.doZoom(c,this.pin1Dy0.getYVal(),g,this.pin1Dy1.getYVal(),!1,!1,!1,!0,!0)):a===this.pin2Dy01&&(this.imageView.setView0(this.pin2Dx0.xPixel0,this.imageView.toPixelY0(c),this.pin2Dx1.xPixel0,this.imageView.toPixelY0(g)),this.doZoom(this.imageView.toX(this.imageView.xPixel0),this.getScale().minY,this.imageView.toX(this.imageView.xPixel0+
this.imageView.xPixels-1),this.getScale().maxY,!1,!1,!1,!1,!0))}}else{var h=Double.$valueOf(b).doubleValue();a.isXtype?(g=a===this.pin1Dx0||a===this.cur2Dx0||a===this.pin2Dx0?this.pin1Dx1.getXVal():this.pin1Dx0.getXVal(),this.doZoom(h,0,g,0,!a.is2D,!1,!1,!0,!0)):a===this.cur2Dy?this.setCurrentSubSpectrum(x(h)):a===this.pin2Dy0||a===this.pin2Dy1?(g=a===this.pin2Dy0?this.pin2Dy1.yPixel0:this.pin2Dy0.yPixel0,this.imageView.setView0(this.pin2Dx0.xPixel0,this.imageView.subIndexToPixelY(x(h)),this.pin2Dx1.xPixel0,
g)):(g=a===this.pin1Dy0?this.pin1Dy1.getYVal():this.pin1Dy0.getYVal(),this.doZoom(this.pin1Dx0.getXVal(),h,this.pin1Dx1.getXVal(),g,null==this.imageView,null==this.imageView,!1,!1,!0))}}catch(e){if(!y(e,Exception))throw e;}}},"JSV.common.PlotWidget");c(c$,"removeAllHighlights",function(a){if(null==a)this.highlights.clear();else for(var b=this.highlights.size();0<=--b;)this.highlights.get(b).spectrum===a&&this.highlights.removeItemAt(b)},"JSV.common.Spectrum");c(c$,"setCoordClicked",function(a,b,d){0==
d&&(this.nextClickForSetPeak=null);if(Double.isNaN(b))return this.pd.coordClicked=null,this.pd.coordsClicked=null;this.pd.coordClicked=(new JSV.common.Coordinate).set(this.lastClickX=b,d);this.pd.coordsClicked=this.getSpectrum().getXYCoords();this.pd.xPixelClicked=this.lastPixelX=a;return this.pd.coordClicked},"~N,~N,~N");c(c$,"setWidgets",function(a,b,d){if(a||null==this.pin1Dx0)null==this.zoomBox1D?this.newPins():this.resetPinPositions();this.setDerivedPins(b);this.setPinSliderPositions(d)},"~B,~N,~B");
c(c$,"newPins",function(){this.zoomBox1D=new JSV.common.PlotWidget("zoomBox1D");this.pin1Dx0=new JSV.common.PlotWidget("pin1Dx0");this.pin1Dx1=new JSV.common.PlotWidget("pin1Dx1");this.pin1Dy0=new JSV.common.PlotWidget("pin1Dy0");this.pin1Dy1=new JSV.common.PlotWidget("pin1Dy1");this.pin1Dx01=new JSV.common.PlotWidget("pin1Dx01");this.pin1Dy01=new JSV.common.PlotWidget("pin1Dy01");this.cur1D2x1=new JSV.common.PlotWidget("cur1D2x1");this.cur1D2x1.color=JSV.common.ScriptToken.PEAKTABCOLOR;this.cur1D2x2=
new JSV.common.PlotWidget("cur1D2x2");this.cur1D2x2.color=JSV.common.ScriptToken.PEAKTABCOLOR;if(null!=this.imageView){this.zoomBox2D=new JSV.common.PlotWidget("zoomBox2D");this.pin2Dx0=new JSV.common.PlotWidget("pin2Dx0");this.pin2Dx1=new JSV.common.PlotWidget("pin2Dx1");this.pin2Dy0=new JSV.common.PlotWidget("pin2Dy0");this.pin2Dy1=new JSV.common.PlotWidget("pin2Dy1");this.pin2Dx01=new JSV.common.PlotWidget("pin2Dx01");this.pin2Dy01=new JSV.common.PlotWidget("pin2Dy01");this.cur2Dx0=new JSV.common.PlotWidget("cur2Dx0");
this.cur2Dx1=new JSV.common.PlotWidget("cur2Dx1");this.cur2Dy=new JSV.common.PlotWidget("cur2Dy");this.pin2Dy0.setY(0,this.imageView.toPixelY0(0));var a=this.getSpectrumAt(0).getSubSpectra().size();this.pin2Dy1.setY(a,this.imageView.toPixelY0(a))}this.setWidgetX(this.pin1Dx0,this.getScale().minX);this.setWidgetX(this.pin1Dx1,this.getScale().maxX);this.setWidgetY(this.pin1Dy0,this.getScale().minY);this.setWidgetY(this.pin1Dy1,this.getScale().maxY);this.widgets=w(-1,[this.zoomBox1D,this.zoomBox2D,this.pin1Dx0,
this.pin1Dx01,this.pin1Dx1,this.pin1Dy0,this.pin1Dy01,this.pin1Dy1,this.pin2Dx0,this.pin2Dx01,this.pin2Dx1,this.pin2Dy0,this.pin2Dy01,this.pin2Dy1,this.cur2Dx0,this.cur2Dx1,this.cur2Dy,this.cur1D2x1,this.cur1D2x2])});c(c$,"setWidgetX",function(a,b){a.setX(b,this.toPixelX0(b))},"JSV.common.PlotWidget,~N");c(c$,"setWidgetY",function(a,b){a.setY(b,this.toPixelY0(b))},"JSV.common.PlotWidget,~N");c(c$,"resetPinsFromView",function(){null!=this.pin1Dx0&&(this.setWidgetX(this.pin1Dx0,this.getScale().minXOnScale),
this.setWidgetX(this.pin1Dx1,this.getScale().maxXOnScale),this.setWidgetY(this.pin1Dy0,this.getScale().minYOnScale),this.setWidgetY(this.pin1Dy1,this.getScale().maxYOnScale))});c(c$,"resetPinPositions",function(){this.resetX(this.pin1Dx0);this.resetY(this.pin1Dy0);this.resetY(this.pin1Dy1);null==this.imageView?(null!=this.gs2dLinkedX&&this.resetX(this.cur1D2x1),null!=this.gs2dLinkedY&&this.resetX(this.cur1D2x2)):(this.pin2Dy0.setY(this.pin2Dy0.getYVal(),this.imageView.toPixelY0(this.pin2Dy0.getYVal())),
this.pin2Dy1.setY(this.pin2Dy1.getYVal(),this.imageView.toPixelY0(this.pin2Dy1.getYVal())))});c(c$,"resetX",function(a){this.setWidgetX(a,a.getXVal())},"JSV.common.PlotWidget");c(c$,"resetY",function(a){this.setWidgetY(a,a.getYVal())},"JSV.common.PlotWidget");c(c$,"setPinSliderPositions",function(a){this.pin1Dx0.yPixel0=this.pin1Dx1.yPixel0=this.pin1Dx01.yPixel0=this.yPixel0-5;this.pin1Dx0.yPixel1=this.pin1Dx1.yPixel1=this.pin1Dx01.yPixel1=this.yPixel0;this.cur1D2x1.yPixel1=this.cur1D2x2.yPixel1=
this.yPixel0-5;this.cur1D2x1.yPixel0=this.cur1D2x2.yPixel0=this.yPixel1+6;null==this.imageView?(this.pin1Dy0.xPixel0=this.pin1Dy1.xPixel0=this.pin1Dy01.xPixel0=this.xPixel1+5,this.pin1Dy0.xPixel1=this.pin1Dy1.xPixel1=this.pin1Dy01.xPixel1=this.xPixel1):(this.pin1Dy0.xPixel0=this.pin1Dy1.xPixel0=this.pin1Dy01.xPixel0=this.imageView.xPixel1+15,this.pin1Dy0.xPixel1=this.pin1Dy1.xPixel1=this.pin1Dy01.xPixel1=this.imageView.xPixel1+10,this.pin2Dx0.yPixel0=this.pin2Dx1.yPixel0=this.pin2Dx01.yPixel0=this.yPixel0-
5,this.pin2Dx0.yPixel1=this.pin2Dx1.yPixel1=this.pin2Dx01.yPixel1=this.yPixel0,this.pin2Dy0.xPixel0=this.pin2Dy1.xPixel0=this.pin2Dy01.xPixel0=this.imageView.xPixel1+5,this.pin2Dy0.xPixel1=this.pin2Dy1.xPixel1=this.pin2Dy01.xPixel1=this.imageView.xPixel1,this.cur2Dx0.yPixel0=this.cur2Dx1.yPixel0=this.yPixel1+6,this.cur2Dx0.yPixel1=this.cur2Dx1.yPixel1=this.yPixel0-5,this.cur2Dx0.yPixel0=this.cur2Dx1.yPixel0=this.yPixel1+6,this.cur2Dx1.yPixel1=this.cur2Dx1.yPixel1=this.yPixel0-5,this.cur2Dy.xPixel0=
a?x((this.xPixel1+this.imageView.xPixel0)/2):this.imageView.xPixel0-6,this.cur2Dy.xPixel1=this.imageView.xPixel1+5)},"~B");c(c$,"setDerivedPins",function(a){this.triggered=!0;null!=this.gs2dLinkedX&&this.cur1D2x1.setX(this.cur1D2x1.getXVal(),this.toPixelX(this.cur1D2x1.getXVal()));null!=this.gs2dLinkedY&&this.cur1D2x2.setX(this.cur1D2x2.getXVal(),this.toPixelX(this.cur1D2x2.getXVal()));this.pin1Dx01.setX(0,x((this.pin1Dx0.xPixel0+this.pin1Dx1.xPixel0)/2));this.pin1Dy01.setY(0,x((this.pin1Dy0.yPixel0+
this.pin1Dy1.yPixel0)/2));this.pin1Dx01.setEnabled(Math.min(this.pin1Dx0.xPixel0,this.pin1Dx1.xPixel0)>this.xPixel0||Math.max(this.pin1Dx0.xPixel0,this.pin1Dx1.xPixel0)<this.xPixel1);this.pin1Dy01.setEnabled(Math.min(this.pin1Dy0.yPixel0,this.pin1Dy1.yPixel0)>Math.min(this.toPixelY(this.getScale().minY),this.toPixelY(this.getScale().maxY))||Math.max(this.pin1Dy0.yPixel0,this.pin1Dy1.yPixel0)<Math.max(this.toPixelY(this.getScale().minY),this.toPixelY(this.getScale().maxY)));if(null!=this.imageView){var b=
this.pin1Dx0.getXVal();this.cur2Dx0.setX(b,this.imageView.toPixelX(b));b=this.pin1Dx1.getXVal();this.cur2Dx1.setX(b,this.imageView.toPixelX(b));b=this.imageView.toX(this.imageView.xPixel0);this.pin2Dx0.setX(b,this.imageView.toPixelX0(b));b=this.imageView.toX(this.imageView.xPixel1);this.pin2Dx1.setX(b,this.imageView.toPixelX0(b));this.pin2Dx01.setX(0,x((this.pin2Dx0.xPixel0+this.pin2Dx1.xPixel0)/2));b=this.imageView.imageHeight-1-this.imageView.yView1;this.pin2Dy0.setY(b,this.imageView.toPixelY0(b));
b=this.imageView.imageHeight-1-this.imageView.yView2;this.pin2Dy1.setY(b,this.imageView.toPixelY0(b));this.pin2Dy01.setY(0,x((this.pin2Dy0.yPixel0+this.pin2Dy1.yPixel0)/2));this.cur2Dy.yPixel0=this.cur2Dy.yPixel1=this.imageView.subIndexToPixelY(a);this.pin2Dx01.setEnabled(Math.min(this.pin2Dx0.xPixel0,this.pin2Dx1.xPixel0)!=this.imageView.xPixel0||Math.max(this.pin2Dx0.xPixel0,this.pin2Dx1.xPixel1)!=this.imageView.xPixel1);this.pin2Dy01.setEnabled(Math.min(this.pin2Dy0.yPixel0,this.pin2Dy1.yPixel0)!=
this.yPixel0||Math.max(this.pin2Dy0.yPixel0,this.pin2Dy1.yPixel1)!=this.yPixel1)}},"~N");c(c$,"doZoom",function(a,b,d,c,g,h,e,k,l){a==d?(a=this.getScale().minXOnScale,d=this.getScale().maxXOnScale):this.isLinked&&k&&this.pd.doZoomLinked(this,a,d,l,e,g);a>d&&(k=a,a=d,d=k);b>c&&(k=b,b=c,c=k);k=!g&&null!=this.imageView&&(this.imageView.minZ!=b||this.imageView.maxZ!=c);if(this.zoomEnabled||k){if(e){if(!this.getScale().isInRangeX(a)&&!this.getScale().isInRangeX(d))return;this.getScale().isInRangeX(a)?
this.getScale().isInRangeX(d)||(d=this.getScale().maxX):a=this.getScale().minX}this.pd.setTaintedAll();e=this.viewData.getScaleData();var u=E(this.nSpectra,0),m=E(this.nSpectra,0);this.graphsTemp.clear();var n=this.getSpectrumAt(0).getSubSpectra(),n=null==n||2==n.size();if(this.getSpectrumAt(0).is1D()&&!n){if(this.graphsTemp.addLast(this.getSpectrum()),!JSV.common.ScaleData.setDataPointIndices(this.graphsTemp,a,d,3,u,m))return}else if(!JSV.common.ScaleData.setDataPointIndices(this.spectra,a,d,3,u,
m))return;if(n=b==c)g=!k&&g?g=this.getScale().spectrumScaleFactor:1,1E-4>Math.abs(g-1)&&(b=this.getScale().minYOnScale,c=this.getScale().maxYOnScale);g=null;if(n||h)this.getCurrentView(),g=this.viewData.getNewScales(this.iSpectrumSelected,n,b,c);this.getView(a,d,b,c,u,m,e,g);this.setXPixelMovedTo(1E10,1.7976931348623157E308,0,0);this.setWidgetX(this.pin1Dx0,a);this.setWidgetX(this.pin1Dx1,d);this.setWidgetY(this.pin1Dy0,b);this.setWidgetY(this.pin1Dy1,c);null==this.imageView?this.updateDialogs():
(a=this.getSpectrumAt(0).getSubIndex(),d=this.imageView.fixSubIndex(a),d!=a&&this.setCurrentSubSpectrum(d),k&&this.update2dImage(!1));l&&this.addCurrentZoom()}},"~N,~N,~N,~N,~B,~B,~B,~B,~B");c(c$,"updateDialogs",function(){this.updateDialog(JSV.common.Annotation.AType.PeakList,-1);this.updateDialog(JSV.common.Annotation.AType.Measurements,-1)});c(c$,"setCurrentSubSpectrum",function(a){var b=this.getSpectrumAt(0);a=b.setCurrentSubSpectrum(a);b.isForcedSubset()&&this.viewData.setXRangeForSubSpectrum(this.getSpectrum().getXYCoords());
this.pd.notifySubSpectrumChange(a,this.getSpectrum())},"~N");c(c$,"addCurrentZoom",function(){if(this.viewList.size()>this.currentZoomIndex+1)for(var a=this.viewList.size()-1;a>this.currentZoomIndex;a--)this.viewList.removeItemAt(a);this.viewList.addLast(this.viewData);this.currentZoomIndex++});c(c$,"setZoomTo",function(a){this.currentZoomIndex=a;this.viewData=this.viewList.get(a);this.resetPinsFromView()},"~N");c(c$,"clearViews",function(){this.isLinked&&this.pd.clearLinkViews(this);this.setZoom(0,
0,0,0);for(var a=this.viewList.size();1<=--a;)this.viewList.removeItemAt(a)});c(c$,"drawAll",function(a,b,d,c,g,h){this.g2d=this.pd.g2d;this.gMain=a;var e=this.getSpectrumAt(0),k=e.getSubIndex();this.is2DSpectrum=!e.is1D()&&(this.isLinked||this.pd.getBoolean(JSV.common.ScriptToken.DISPLAY2D))&&(null!=this.imageView||this.get2DImage(e));null!=this.imageView&&h&&(this.pd.isPrinting&&this.g2d!==this.pd.g2d0&&this.g2d.newGrayScaleImage(a,this.image2D,this.imageView.imageWidth,this.imageView.imageHeight,
this.imageView.getBuffer()),this.is2DSpectrum&&this.setPositionForFrame(c),this.draw2DImage());var l=this.stackSelected||!this.showAllStacked?this.iSpectrumSelected:-1,u=!this.showAllStacked||1==this.nSpectra||0<=l,e=null==this.imageView||this.pd.display1D,m=0<=l?1:0,n=this.getFixedSelectedSpectrumIndex();if(e&&h&&(this.fillBox(a,this.xPixel0,this.yPixel0,this.xPixel1,this.yPixel1,JSV.common.ScriptToken.PLOTAREACOLOR),0>l)){u=!0;for(l=0;l<this.nSpectra;l++)this.doPlot(l,c)&&0!=m++&&(u=(new Boolean(u&
this.viewData.areYScalesSame(l-1,l))).valueOf())}var j=1==this.nSpectra?0:!this.showAllStacked?this.iSpectrumMovedTo:this.iSpectrumSelected;d=d===a?b:d;if(h){var l=this.pd.getCurrentGraphSet()===this&&!this.isLinked&&(!this.isSplittable||1==this.nSplit||this.pd.currentSplitPoint==c),p=this.zoomEnabled&&!this.isDrawNoSpectra()&&this.pd.isCurrentGraphSet(this)&&this.spectra.get(0).isScalable()&&(l||1==this.nSpectra)&&(1==this.nSplit||this.pd.currentSplitPoint==this.iSpectrumMovedTo);this.drawFrame(a,
j,l,this.isSplittable,p)}if(this.pd.isCurrentGraphSet(this)&&c==this.pd.currentSplitPoint&&(2>m||0<=this.iSpectrumSelected))this.$haveSelectedSpectrum=!0;this.haveSingleYScale=this.showAllStacked&&1<this.nSpectra?this.allowStackedYScale&&u:!0;if(e){u=G(this.yPixels*(this.yStackOffsetPercent/100));this.haveLeftRightArrows=!1;for(p=l=0;l<this.nSpectra;l++)if(this.doPlot(l,c)){var j=this.stackSelected&&0<=this.iSpectrumSelected&&this.iSpectrumSelected!=l,q=!this.reversePlot&&this.getShowAnnotation(JSV.common.Annotation.AType.Integration,
l)&&(!this.showAllStacked||this.iSpectrumSelected==l)?this.getDialog(JSV.common.Annotation.AType.Integration,l).getData():null;this.setScale(l);var r=this.spectra.get(l);1<this.nSplit&&(n=l);var s=!j&&(1==this.nSplit||this.showAllStacked||this.iSpectrumSelected==c),v=s&&this.$haveSelectedSpectrum&&l==n;s&&(this.resetPinsFromView(),this.drawWidgets(b,d,k,g,e,v,!1));this.haveSingleYScale&&(l==n&&h)&&(this.drawGrid(a),this.pd.isPrinting&&1<this.nSplit&&this.drawSpectrumSource(a,l));s&&this.drawWidgets(b,
d,k,!1,e,v,!0);!this.isDrawNoSpectra()&&((1==this.nSpectra||0<=this.iSpectrumSelected)&&(this.haveSingleYScale&&l==n||this.showAllStacked&&this.stackSelected&&l==this.iSpectrumSelected))&&this.drawHighlightsAndPeakTabs(b,d,l);if(h){if((1==m&&0>this.iSpectrumSelected||this.iSpectrumSelected==l&&this.pd.isCurrentGraphSet(this))&&this.pd.titleOn&&!this.pd.titleDrawn)this.pd.drawTitle(a,this.height,this.width,this.pd.getDrawTitle(this.pd.isPrinting)),this.pd.titleDrawn=!0;this.haveSingleYScale&&l==n&&
(this.pd.getBoolean(JSV.common.ScriptToken.YSCALEON)&&this.drawYScale(a,this),this.pd.getBoolean(JSV.common.ScriptToken.YUNITSON)&&this.drawYUnits(a))}var s=r.isContinuous(),v=(1<this.nSplit?l==this.iSpectrumMovedTo:this.isLinked||l==n)&&!this.pd.isPrinting&&r.isContinuous(),w=!j&&null!=this.pendingIntegral&&r===this.pendingIntegral.spec;if(h||w)this.drawPlot(w&&!h?b:a,l,r,s,p,j,null,v,w);this.drawIntegration(b,l,p,j,q,s,v);this.drawMeasurements(b,l);null!=this.pendingMeasurement&&this.pendingMeasurement.spec===
r&&this.drawMeasurement(b,this.pendingMeasurement);v&&0<=this.xPixelMovedTo&&this.drawSpectrumPointer(b,r,p,q);1<this.nSpectra&&(1==this.nSplit&&this.pd.isCurrentGraphSet(this)&&h)&&(this.haveLeftRightArrows=!0,this.pd.isPrinting||(this.setScale(0),j=this.iSpectrumSelected,2!=this.nSpectra&&(this.setPlotColor(a,(j+this.nSpectra-1)%this.nSpectra),this.fillArrow(a,1,this.yHArrows,this.xHArrows-9,!0),this.setCurrentBoxColor(a),this.fillArrow(a,1,this.yHArrows,this.xHArrows-9,!1)),0<=j&&(this.setPlotColor(a,
j),this.fillCircle(a,this.xHArrows,this.yHArrows,!0)),this.setCurrentBoxColor(a),this.fillCircle(a,this.xHArrows,this.yHArrows,!1),this.setPlotColor(a,(j+1)%this.nSpectra),this.fillArrow(a,2,this.yHArrows,this.xHArrows+9,!0),this.setCurrentBoxColor(a),this.fillArrow(a,2,this.yHArrows,this.xHArrows+9,!1)));p-=u}h&&(this.pd.getBoolean(JSV.common.ScriptToken.XSCALEON)&&this.drawXScale(a,this),this.pd.getBoolean(JSV.common.ScriptToken.XUNITSON)&&this.drawXUnits(a))}else h&&(this.pd.getBoolean(JSV.common.ScriptToken.XSCALEON)&&
this.drawXScale(a,this.imageView),this.pd.getBoolean(JSV.common.ScriptToken.YSCALEON)&&this.drawYScale(a,this.imageView),0<=k&&this.draw2DUnits(a)),this.drawWidgets(b,d,k,g,e,!0,!1),this.drawWidgets(b,d,k,g,e,!0,!0);null!=this.annotations&&this.drawAnnotations(b,this.annotations,null)},"~O,~O,~O,~N,~B,~B");c(c$,"drawSpectrumSource",function(a,b){this.pd.printFilePath(a,this.pd.thisWidth-this.pd.right,this.yPixel0,this.spectra.get(b).getFilePath())},"~O,~N");c(c$,"doPlot",function(a,b){var d=this.stackSelected&&
0<=this.iSpectrumSelected&&this.iSpectrumSelected!=a,c=this.showAllStacked||-1==this.iSpectrumSelected||this.iSpectrumSelected==a;return 1<this.nSplit?a==b:c&&(!this.pd.isPrinting||!d)},"~N,~N");c(c$,"drawSpectrumPointer",function(a,b,d,c){this.setColorFromToken(a,JSV.common.ScriptToken.PEAKTABCOLOR);var g=this.pd.integralShiftMode;null!=c&&((!this.pd.ctrlPressed||this.pd.isIntegralDrag)&&!this.isOnSpectrum(this.pd.mouseX,this.pd.mouseY,-1)?c=null:0==g&&(g=this.getShiftMode(this.pd.mouseX,this.pd.mouseY),
0==g&&(g=2147483647)));var h=this.yValueMovedTo;this.yValueMovedTo=null==c?b.getYValueAt(this.xValueMovedTo):c.getPercentYValueAt(this.xValueMovedTo);this.setCoordStr(this.xValueMovedTo,this.yValueMovedTo);if(0!=g&&(this.setPlotColor(a,2147483647==g?-1:0),(0>g||2147483647==g)&&this.drawHandle(a,this.xPixelPlot1,this.yPixelPlot0,3,!1),0<g&&this.drawHandle(a,this.xPixelPlot0,this.yPixelPlot1,3,!1),2147483647!=g))return;null!=c&&this.g2d.setStrokeBold(a,!0);Double.isNaN(h)||null!=this.pendingMeasurement?
(this.g2d.drawLine(a,this.xPixelMovedTo,this.yPixel0,this.xPixelMovedTo,this.yPixel1),0<=this.xPixelMovedTo2&&this.g2d.drawLine(a,this.xPixelMovedTo2,this.yPixel0,this.xPixelMovedTo2,this.yPixel1),this.yValueMovedTo=NaN):(b=null==c?d+this.toPixelY(this.yValueMovedTo):this.toPixelYint(this.yValueMovedTo/100),b==this.fixY(b)&&this.g2d.drawLine(a,this.xPixelMovedTo,b-10,this.xPixelMovedTo,b+10));null!=c&&this.g2d.setStrokeBold(a,!1)},"~O,JSV.common.Spectrum,~N,JSV.common.IntegralData");c(c$,"setScale",
function(a){this.viewData.setScale(a,this.xPixels,this.yPixels,this.spectra.get(a).isInverted())},"~N");c(c$,"draw2DUnits",function(a){var b=this.getSpectrumAt(0).nucleusX,d=this.getSpectrumAt(0).nucleusY;this.setColorFromToken(a,JSV.common.ScriptToken.PLOTCOLOR);this.drawUnits(a,b,this.imageView.xPixel1+5*this.pd.scalingFactor,this.yPixel1,1,1);this.drawUnits(a,d,this.imageView.xPixel0-5*this.pd.scalingFactor,this.yPixel0,1,0)},"~O");c(c$,"drawPeakTabs",function(a,b,d){var c=1==this.nSpectra||0<=
this.iSpectrumSelected?d.getPeakList():null;if(null!=c&&0<c.size()){null!=this.piMouseOver&&this.piMouseOver.spectrum===d&&this.pd.isMouseUp()?(this.g2d.setGraphicsColor(b,this.g2d.getColor4(240,240,240,140)),this.drawPeak(b,this.piMouseOver,0),d.setHighlightedPeak(this.piMouseOver)):d.setHighlightedPeak(null);this.setColorFromToken(a,JSV.common.ScriptToken.PEAKTABCOLOR);for(b=c.size();0<=--b;){var g=c.get(b);this.drawPeak(a,g,g===d.getSelectedPeak()?14:7)}}},"~O,~O,JSV.common.Spectrum");c(c$,"drawPeak",
function(a,b,d){if(!this.pd.isPrinting){var c=b.getXMin(),g=b.getXMax();c!=g&&this.drawBar(a,b,c,g,null,d)}},"~O,JSV.common.PeakInfo,~N");c(c$,"drawWidgets",function(a,b,d,c,g,h,e){this.setWidgets(c,d,g);if(!this.pd.isPrinting||!(null==this.imageView?!this.cur1D2Locked:this.sticky2Dcursor)){!this.pd.isPrinting&&!e&&(g?(this.fillBox(a,this.xPixel0,this.pin1Dx0.yPixel1,this.xPixel1,this.pin1Dx1.yPixel1+2,JSV.common.ScriptToken.GRIDCOLOR),this.fillBox(a,this.pin1Dx0.xPixel0,this.pin1Dx0.yPixel1,this.pin1Dx1.xPixel0,
this.pin1Dx1.yPixel1+2,JSV.common.ScriptToken.PLOTCOLOR)):(this.fillBox(a,this.imageView.xPixel0,this.pin2Dx0.yPixel1,this.imageView.xPixel1,this.pin2Dx0.yPixel1+2,JSV.common.ScriptToken.GRIDCOLOR),this.fillBox(a,this.pin2Dx0.xPixel0,this.pin2Dx0.yPixel1,this.pin2Dx1.xPixel0,this.pin2Dx1.yPixel1+2,JSV.common.ScriptToken.PLOTCOLOR),this.fillBox(a,this.pin2Dy0.xPixel1,this.yPixel1,this.pin2Dy1.xPixel1+2,this.yPixel0,JSV.common.ScriptToken.GRIDCOLOR),this.fillBox(a,this.pin2Dy0.xPixel1,this.pin2Dy0.yPixel1,
this.pin2Dy1.xPixel1+2,this.pin2Dy1.yPixel0,JSV.common.ScriptToken.PLOTCOLOR)),this.fillBox(a,this.pin1Dy0.xPixel1,this.yPixel1,this.pin1Dy1.xPixel1+2,this.yPixel0,JSV.common.ScriptToken.GRIDCOLOR),h&&this.fillBox(a,this.pin1Dy0.xPixel1,this.pin1Dy0.yPixel1,this.pin1Dy1.xPixel1+2,this.pin1Dy1.yPixel0,JSV.common.ScriptToken.PLOTCOLOR));for(d=0;d<this.widgets.length;d++)if(c=this.widgets[d],!(null==c||!c.isPinOrCursor&&!this.zoomEnabled)){var k=c===this.cur1D2x1||c===this.cur1D2x2||c===this.cur2Dx0||
c===this.cur2Dx1||c===this.cur2Dy;if((c.isPin||!c.isPinOrCursor)!=e){if(c.is2D){if(c===this.cur2Dx0&&!g)continue}else{var l=c===this.pin1Dy0||c===this.pin1Dy1||c===this.pin1Dy01;if(null!=this.imageView&&g==l||l&&!h||c===this.cur1D2x1&&null==this.gs2dLinkedX||c===this.cur1D2x2&&null==this.gs2dLinkedY||c===this.zoomBox1D&&(this.pd.isIntegralDrag||0!=this.pd.integralShiftMode))if(!this.isLinked||null!=this.imageView)continue}if(!this.pd.isPrinting||k)c.isPinOrCursor?(this.setColorFromToken(a,c.color),
this.g2d.drawLine(a,c.xPixel0,c.yPixel0,c.xPixel1,c.yPixel1),c.isVisible=!0,c.isPin&&this.drawHandle(a,c.xPixel0,c.yPixel0,2,!c.isEnabled)):c.xPixel1!=c.xPixel0&&this.fillBox(b,c.xPixel0,c.yPixel0,c.xPixel1,c.yPixel1,c===this.zoomBox1D&&this.pd.shiftPressed?JSV.common.ScriptToken.ZOOMBOXCOLOR2:JSV.common.ScriptToken.ZOOMBOXCOLOR)}}}},"~O,~O,~N,~B,~B,~B,~B");c(c$,"drawBar",function(a,b,d,c,g,h){var e=c+d,k=Math.abs(c-d),l=Math.abs(this.toX(this.xPixel1)-this.toX(this.xPixel0));0<h&&k>l/20&&(k=l/20,
d=e/2-k,c=e/2+k);d=this.toPixelX(d);c=this.toPixelX(c);d>c&&(e=d,d=c,c=e);d=this.fixX(d);c=this.fixX(c);3>c-d&&(d-=2,c+=2);null!=b&&b.setPixelRange(d,c);0==h?this.fillBox(a,d,this.yPixel0,c,this.yPixel0+this.yPixels,g):(this.fillBox(a,d,this.yPixel0+2,c,this.yPixel0+5,g),null!=b&&(d=x((d+c)/2),this.fillBox(a,d-1,this.yPixel0+2,d+1,this.yPixel0+2+h,g)))},"~O,JSV.common.PeakInfo,~N,~N,JSV.common.ScriptToken,~N");c(c$,"drawIntegration",function(a,b,d,c,g){null!=g&&(this.haveIntegralDisplayed(b)&&this.drawPlot(a,
b,this.spectra.get(b),!0,d,!1,g,!0,!1),this.drawIntegralValues(a,b,d));b=this.getIntegrationRatios(b);null!=b&&this.drawAnnotations(a,b,JSV.common.ScriptToken.INTEGRALPLOTCOLOR)},"~O,~N,~N,~B,JSV.common.IntegralData,~B,~B");c(c$,"getMeasurements",function(a,b){var d=this.getDialog(a,b);return null==d||0==d.getData().size()||!d.getState()?null:d.getData()},"JSV.common.Annotation.AType,~N");c(c$,"drawPlot",function(a,b,d,c,g,e,t,k,l){var u=null==t?d.getXYCoords():this.getIntegrationGraph(b).getXYCoords(),
m=null!=t;t=m?t.getBitSet():null;k=l||null!=d.fillColor&&k;e=e?-2:m?-1:!this.allowStacking?0:b;this.setPlotColor(a,e);var n=!0,j=this.toPixelY(0);m?k=(new Boolean(k&j==this.fixY(j))).valueOf():j=this.fixY(j);var p=m||k?this.pd.getColor(JSV.common.ScriptToken.INTEGRALPLOTCOLOR):null;d=null==p||null==d.fillColor?p:d.fillColor;p=this.viewData.getStartingPointIndex(b);b=this.viewData.getEndingPointIndex(b);if(c){b--;var q=(m||null!=this.pendingIntegral)&&this.g2d.canDoLineTo();q&&this.g2d.doStroke(a,
!0);var r=!1;for(c=p;c<=b;c++){var s=u[c],v=u[c+1],w=m?this.toPixelYint(s.getYVal()):this.toPixelY(s.getYVal());if(-2147483648!=w){var x=m?this.toPixelYint(v.getYVal()):this.toPixelY(v.getYVal());if(-2147483648!=x){var s=s.getXVal(),v=v.getXVal(),y=this.toPixelX(s),z=this.toPixelX(v),w=this.fixY(g+w),x=this.fixY(g+x);m&&(c==p&&(this.xPixelPlot1=y,this.yPixelPlot0=w),this.xPixelPlot0=z,this.yPixelPlot1=x);if(!(z==y&&w==x))if(k&&l&&this.pendingIntegral.overlaps(s,v))null!=d&&(this.g2d.doStroke(a,!1),
this.g2d.setGraphicsColor(a,d)),this.g2d.fillRect(a,Math.min(y,z),Math.min(j,w),Math.max(1,Math.abs(z-y)),Math.abs(j-w)),null!=d&&(this.g2d.doStroke(a,!1),this.g2d.doStroke(a,!0),r=!1,this.setPlotColor(a,e));else if(!(w==x&&w==this.yPixel0)&&(null!=t&&t.get(c)!=n&&(n=t.get(c),q&&r&&(this.g2d.doStroke(a,!1),this.g2d.doStroke(a,!0),r=!1),!this.pd.isPrinting&&0!=this.pd.integralShiftMode?this.setPlotColor(a,0):n?this.setColorFromToken(a,JSV.common.ScriptToken.INTEGRALPLOTCOLOR):this.setPlotColor(a,-3)),
!this.pd.isPrinting||n))r?this.g2d.lineTo(a,z,x):(this.g2d.drawLine(a,y,w,z,x),r=q)}}}q&&this.g2d.doStroke(a,!1)}else{for(c=p;c<=b;c++)l=u[c],x=this.toPixelY(l.getYVal()),-2147483648!=x&&(y=this.toPixelX(l.getXVal()),w=this.toPixelY(Math.max(this.getScale().minYOnScale,0)),w=this.fixY(g+w),x=this.fixY(g+x),w==x&&(w==this.yPixel0||w==this.yPixel1)||this.g2d.drawLine(a,y,w,y,x));this.getScale().isYZeroOnScale()&&(g+=this.toPixelY(this.getScale().spectrumYRef),g==this.fixY(g)&&this.g2d.drawLine(a,this.xPixel1,
g,this.xPixel0,g))}},"~O,~N,JSV.common.Spectrum,~B,~N,~B,JSV.common.IntegralData,~B,~B");c(c$,"drawFrame",function(a,b,d,c,g){if(!this.pd.gridOn||this.pd.isPrinting)if(this.setColorFromToken(a,JSV.common.ScriptToken.GRIDCOLOR),this.g2d.drawRect(a,this.xPixel0,this.yPixel0,this.xPixels,this.yPixels),this.pd.isPrinting)return;this.setCurrentBoxColor(a);g&&(0<=b&&(this.setPlotColor(a,b),this.fillArrow(a,3,this.xVArrows,x((this.yPixel00+this.yPixel11)/2)-9,!0),this.fillArrow(a,4,this.xVArrows,x((this.yPixel00+
this.yPixel11)/2)+9,!0),this.setCurrentBoxColor(a)),this.fillArrow(a,3,this.xVArrows,x((this.yPixel00+this.yPixel11)/2)-9,!1),this.fillCircle(a,this.xVArrows,x((this.yPixel00+this.yPixel11)/2),!1),this.fillArrow(a,4,this.xVArrows,x((this.yPixel00+this.yPixel11)/2)+9,!1));if(null==this.imageView&&d){b=this.xPixel00+10;d=this.xPixel11-10;g=this.yPixel00+1;var e=this.yPixel11-2;this.g2d.drawLine(a,b,g,d,g);this.g2d.drawLine(a,d,g,d,e);this.g2d.drawLine(a,b,e,d,e);this.splitterX=this.closerX=-2147483648;
this.drawBox(a,d-10,g,d,g+10,null);this.g2d.drawLine(a,d-10,g+10,d,g);this.g2d.drawLine(a,d,g+10,d-10,g);this.closerX=d-10;this.closerY=g;c&&(d-=10,this.fillBox(a,d-10,g,d,g+10,null),this.splitterX=d-10,this.splitterY=g)}},"~O,~N,~B,~B,~B");c(c$,"drawGrid",function(a){if(this.pd.gridOn&&null==this.imageView){this.setColorFromToken(a,JSV.common.ScriptToken.GRIDCOLOR);var b;if(Double.isNaN(this.getScale().firstX)){b=this.getScale().maxXOnScale+this.getScale().steps[0]/2;for(var d=this.getScale().minXOnScale;d<
b;d+=this.getScale().steps[0]){var c=this.toPixelX(d);this.g2d.drawLine(a,c,this.yPixel0,c,this.yPixel1)}}else{b=1.0001*this.getScale().maxXOnScale;for(d=this.getScale().firstX;d<=b;d+=this.getScale().steps[0])c=this.toPixelX(d),this.g2d.drawLine(a,c,this.yPixel0,c,this.yPixel1)}for(d=this.getScale().firstY;d<this.getScale().maxYOnScale+this.getScale().steps[1]/2;d+=this.getScale().steps[1])b=this.toPixelY(d),b==this.fixY(b)&&this.g2d.drawLine(a,this.xPixel0,b,this.xPixel1,b)}},"~O");c(c$,"drawXScale",
function(a,b){this.setColorFromToken(a,JSV.common.ScriptToken.SCALECOLOR);this.pd.isPrinting&&this.g2d.drawLine(a,b.getXPixel0(),this.yPixel1,b.getXPixel0()+b.getXPixels()-1,this.yPixel1);for(var d=this.getScale().precision[0],c=this.pd.setFont(a,b.getXPixels(),0,this.pd.isPrinting?10:12,!1),g=this.yPixel1,e=this.yPixel1+4*this.pd.scalingFactor,t=this.yPixel1+2*this.pd.scalingFactor,c=c.getHeight(),k=b.toPixelX(this.getScale().steps[0])-b.toPixelX(0),l=Math.abs(0.95*k),u=this.getScale().firstX-this.getScale().steps[0],
m=1.0001*(this.getScale().maxXOnScale+this.getScale().steps[0]),n=0;2>n;n++){1==n&&JSV.common.ScaleData.fixScale(this.mapX);for(var j=1E10,p=u;p<=m;p+=this.getScale().steps[0]){var k=b.toPixelX(p),q=Double.$valueOf(p),r;switch(n){case 0:r=JU.DF.formatDecimalDbl(p,d);this.mapX.put(q,r);this.drawTick(a,k,g,e,b);k=Math.abs(j-p);j=this.getScale().minorTickCounts[0];if(0!=j){k/=j;for(r=1;r<j;r++)this.drawTick(a,b.toPixelX(p-r*k),g,t,b)}j=p;continue;case 1:r=this.mapX.get(q);if(null==r||k!=b.fixX(k))continue;
var q=this.pd.getStringWidth(r),s=k+x(q/2)==b.fixX(k+x(q/2))?2:0;0<s&&this.g2d.drawString(a,r,k-x(q/s),e+c);p+=Math.floor(q/l)*this.getScale().steps[0]}}}this.mapX.clear()},"~O,JSV.common.XYScaleConverter");c(c$,"drawTick",function(a,b,d,c,g){b==g.fixX(b)&&this.g2d.drawLine(a,b,d,b,c)},"~O,~N,~N,~N,JSV.common.XYScaleConverter");c(c$,"drawYScale",function(a,b){var d=b.getScale(),c=d.precision[1],g=this.pd.setFont(a,b.getXPixels(),0,this.pd.isPrinting?10:12,!1).getHeight(),e=d.maxYOnScale+d.steps[1]/
2,t=-2147483648;this.setColorFromToken(a,JSV.common.ScriptToken.SCALECOLOR);for(var k=0;2>k;k++){1==k&&JSV.common.ScaleData.fixScale(this.mapX);for(var l=d.firstY;l<e;l+=d.steps[1]){var u=Double.$valueOf(l),m=b.getXPixel0(),n=b.toPixelY(l);if(n==b.fixY(n)){var j;0==k&&this.g2d.drawLine(a,m,n,m-3*this.pd.scalingFactor,n);if(!(Math.abs(n-t)<=g))switch(t=n,k){case 0:j=JU.DF.formatDecimalDbl(l,c);this.mapX.put(u,j);break;case 1:j=this.mapX.get(u);if(null==j)continue;j.startsWith("0")&&j.contains("E")&&
(j="0");this.g2d.drawString(a,j,m-4*this.pd.scalingFactor-this.pd.getStringWidth(j),n+x(g/3))}}}}this.mapX.clear()},"~O,JSV.common.XYScaleConverter");c(c$,"drawXUnits",function(a){var b=this.spectra.get(0).getAxisLabel(!0);null!=b&&this.drawUnits(a,b,this.xPixel1+25*this.pd.scalingFactor,this.yPixel1+5*this.pd.scalingFactor,1,1)},"~O");c(c$,"drawUnits",function(a,b,d,c,g,e){this.setColorFromToken(a,JSV.common.ScriptToken.UNITSCOLOR);this.pd.setFont(a,(null==this.imageView?this:this.imageView).getXPixels(),
3,10,!1);this.g2d.drawString(a,b,x(d-this.pd.getStringWidth(b)*g),x(c+this.pd.getFontHeight()*e))},"~O,~S,~N,~N,~N,~N");c(c$,"drawYUnits",function(a){var b=this.spectra.get(0).getAxisLabel(!1);null!=b&&this.drawUnits(a,b,(this.pd.isPrinting?30:5)*this.pd.scalingFactor,this.yPixel0+(this.pd.isPrinting?0:5)*this.pd.scalingFactor,0,-1)},"~O");c(c$,"drawHighlightsAndPeakTabs",function(a,b,d){var c=this.getMeasurements(JSV.common.Annotation.AType.PeakList,d),g=this.spectra.get(d);if(this.pd.isPrinting)null!=
c&&(this.setColorFromToken(a,JSV.common.ScriptToken.PEAKTABCOLOR),this.printPeakList(a,g,c));else{if(null==c){for(var e=0;e<this.highlights.size();e++){var t=this.highlights.get(e);t.spectrum===g&&(this.pd.setHighlightColor(t.color),this.drawBar(b,null,t.x1,t.x2,JSV.common.ScriptToken.HIGHLIGHTCOLOR,0))}this.pd.peakTabsOn&&this.drawPeakTabs(a,b,g)}if(null!=c){b=g.isInverted()?this.yPixel1-10*this.pd.scalingFactor:this.yPixel0;this.setColorFromToken(a,JSV.common.ScriptToken.PEAKTABCOLOR);for(e=c.size();0<=
--e;)g=c.get(e),g=this.toPixelX(g.getXVal()),this.g2d.drawLine(a,g,b,g,b+10*this.pd.scalingFactor);this.isVisible(this.getDialog(JSV.common.Annotation.AType.PeakList,d))&&(b=this.toPixelY(c.getThresh()),b==this.fixY(b)&&!this.pd.isPrinting&&this.g2d.drawLine(a,this.xPixel0,b,this.xPixel1,b))}}},"~O,~O,~N");c(c$,"printPeakList",function(a,b,d){var c=d.getMeasurementListArray(null);if(0!=c.length){this.pd.setFont(a,this.xPixels,0,8,!1);for(var g=this.pd.getFontHeight(),e=E(d.size(),0),t=E(d.size(),
0),k=0,l=5*this.pd.scalingFactor,u=10*this.pd.scalingFactor,m=15*this.pd.scalingFactor,n=25*this.pd.scalingFactor,j=0;j<c.length;j++)t[j]=this.toPixelX(Double.parseDouble(c[j][1])),0==j?e[j]=t[j]:(e[j]=Math.max(e[j-1]+g,t[j]+g),k+=e[j]-t[j]);k/=2*c.length;e[0]-k<this.xPixel0+n&&(k=e[0]-(this.xPixel0+n));for(j=0;j<c.length;j++)e[j]-=k;j=b.isInverted();b=this.pd.getStringWidth("99.9999");for(var k=6<=c[0].length?this.pd.getStringWidth("99.99"):0,n=j?-1:1,p=(j?this.yPixel1:this.yPixel0)+n*(k+b+m),j=
0;j<c.length;j++)this.g2d.drawLine(a,e[j],p,e[j],p+l*n),this.g2d.drawLine(a,e[j],p+l*n,t[j],p+u*n),this.g2d.drawLine(a,t[j],p+u*n,t[j],p+m*n),0<k&&0<c[j][4].length&&this.g2d.drawLine(a,x((e[j]+e[j-1])/2),p-b+l,x((e[j]+e[j-1])/2),p-b-l);p-=2*n*this.pd.scalingFactor;0<k&&(this.drawStringRotated(a,-90,e[0]-m,p,"  ppm"),this.drawStringRotated(a,-90,e[0]-m,p-b-l," Hz"));for(j=d.size();0<=--j;)this.drawStringRotated(a,-90*n,e[j]+x(n*g/3),p,c[j][1]),0<k&&0<c[j][4].length&&(d=x((e[j]+e[j-1])/2)+x(g/3),this.drawStringRotated(a,
-90,d,p-b-l,c[j][4]))}},"~O,JSV.common.Spectrum,JSV.common.PeakData");c(c$,"drawStringRotated",function(a,b,d,c,g){this.g2d.drawStringRotated(a,g,d,c,b)},"~O,~N,~N,~N,~S");c(c$,"drawAnnotations",function(a,b,d){this.pd.setFont(a,this.xPixels,1,18,!1);for(var c=b.size();0<=--c;){var g=b.get(c);this.setAnnotationColor(a,g,d);var e=(g.is2D?this.imageView:this).toPixelX(g.getXVal()),t=g.isPixels()?x(this.yPixel0+10+10*this.pd.scalingFactor-g.getYVal()):g.is2D?this.imageView.subIndexToPixelY(x(g.getYVal())):
this.toPixelY(g.getYVal());this.g2d.drawString(a,g.text,e+g.offsetX*this.pd.scalingFactor,t-g.offsetY*this.pd.scalingFactor)}},"~O,JU.Lst,JSV.common.ScriptToken");c(c$,"drawIntegralValues",function(a,b,d){var c=this.getMeasurements(JSV.common.Annotation.AType.Integration,b);if(null!=c){this.pd.isPrinting?this.pd.setFont(a,this.xPixels,0,8,!1):this.pd.setFont(a,this.xPixels,1,12,!1);this.setColorFromToken(a,JSV.common.ScriptToken.INTEGRALPLOTCOLOR);var g=this.pd.getFontHeight();this.g2d.setStrokeBold(a,
!0);for(var e=c.size();0<=--e;){var t=c.get(e);if(0!=t.getValue()){var k=this.toPixelX(t.getXVal2()),l=d*this.pd.scalingFactor+this.toPixelYint(t.getYVal()),j=d*this.pd.scalingFactor+this.toPixelYint(t.getYVal2());k!=this.fixX(k)||(l!=this.fixY(l)||j!=this.fixY(j))||(this.pd.isPrinting||this.g2d.drawLine(a,k,l,k,j),this.g2d.drawString(a,"  "+t.text,k,x((l+j)/2)+x(g/3)))}}this.g2d.setStrokeBold(a,!1)}b==this.getFixedSelectedSpectrumIndex()&&(this.selectedSpectrumIntegrals=c)},"~O,~N,~N");c(c$,"drawMeasurements",
function(a,b){var d=this.getMeasurements(JSV.common.Annotation.AType.Measurements,b);if(null!=d)for(var c=d.size();0<=--c;)this.drawMeasurement(a,d.get(c));b==this.getFixedSelectedSpectrumIndex()&&(this.selectedSpectrumMeasurements=d)},"~O,~N");c(c$,"drawMeasurement",function(a,b){if(!(0==b.text.length&&b!==this.pendingMeasurement)){this.pd.setFont(a,this.xPixels,1,12,!1);this.g2d.setGraphicsColor(a,b===this.pendingMeasurement?this.pd.getColor(JSV.common.ScriptToken.PEAKTABCOLOR):this.pd.BLACK);var d=
this.toPixelX(b.getXVal()),c=this.toPixelY(b.getYVal()),g=this.toPixelX(b.getXVal2());if(!Double.isNaN(b.getXVal())&&!(d!=this.fixX(d)||g!=this.fixX(g))){var e=2<=Math.abs(d-g),t=this.getScale().isYZeroOnScale()&&b.spec.isHNMR(),k=x((d+g)/2);this.g2d.setStrokeBold(a,!0);e&&this.g2d.drawLine(a,d,c,g,c);t&&this.g2d.drawLine(a,d+1,this.yPixel1-1,g,this.yPixel1-1);this.g2d.setStrokeBold(a,!1);e&&this.g2d.drawString(a,b.text,k+b.offsetX,c-b.offsetY);t&&(this.g2d.drawLine(a,d,this.yPixel1,d,this.yPixel1-
6*this.pd.scalingFactor),this.g2d.drawLine(a,g,this.yPixel1,g,this.yPixel1-6*this.pd.scalingFactor))}}},"~O,JSV.common.Measurement");c(c$,"getPinSelected",function(a,b){if(null!=this.widgets)for(var d=0;d<this.widgets.length;d++)if(null!=this.widgets[d]&&this.widgets[d].isPinOrCursor&&this.widgets[d].selected(a,b))return this.widgets[d];return null},"~N,~N");c(c$,"set2DCrossHairs",function(a,b){var d;if(a==this.imageView.fixX(a)&&b==this.fixY(b)&&(this.pin1Dx1.setX(d=this.imageView.toX(a),this.toPixelX(d)),
this.cur2Dx1.setX(d,a),this.setCurrentSubSpectrum(this.imageView.toSubspectrumIndex(b)),this.isLinked)){var c=this.imageView.toY(b);this.pd.set2DCrossHairsLinked(this,d,c,!this.sticky2Dcursor)}},"~N,~N");c(c$,"reset2D",function(a){a?(this.imageView.setView0(this.imageView.xPixel0,this.pin2Dy0.yPixel0,this.imageView.xPixel1,this.pin2Dy1.yPixel0),this.doZoom(0,this.getScale().minY,0,this.getScale().maxY,!0,!1,!1,!1,!0)):this.imageView.setView0(this.pin2Dx0.xPixel0,this.imageView.yPixel0,this.pin2Dx1.xPixel0,
this.imageView.yPixel1)},"~B");c(c$,"setAnnotationText",function(a){var b=this.pd.getInput("New text?","Set Label",a.text);if(null==b)return!1;0==b.length?this.annotations.removeObj(a):a.text=b;return!0},"JSV.common.Annotation");c(c$,"checkIntegral",function(a,b,d){var c=this.getDialog(JSV.common.Annotation.AType.Integration,-1);if(null==c)return!1;a=c.getData().addIntegralRegion(a,b);d&&v(c,JSV.dialog.JSVDialog)&&c.update(null,0,0);if(Double.isNaN(b))return!1;this.pendingIntegral=d?null:a;this.pd.isIntegralDrag=
!d;this.selectedSpectrumIntegrals=null;return!0},"~N,~N,~B");c(c$,"setToolTipForPixels",function(a,b){if(this.iSpectrumMovedTo!=this.iSpectrumClicked||this.pd.getCurrentGraphSet()!==this)this.pd.setToolTipText("click spectrum to activate");else if(this.isSplitWidget(a,b))this.pd.setToolTipText("click to "+(1<this.nSplit?"combine":"split"));else if(this.isCloserWidget(a,b))this.pd.setToolTipText("click to close");else{var d=this.getPinSelected(a,b),c=this.getScale().precision[0],g=this.getScale().precision[1];
if(null!=d)this.setStartupPinTip()||(d===this.pin1Dx01||d===this.pin2Dx01?c=JU.DF.formatDecimalDbl(Math.min(this.pin1Dx0.getXVal(),this.pin1Dx1.getXVal()),c)+" - "+JU.DF.formatDecimalDbl(Math.max(this.pin1Dx0.getXVal(),this.pin1Dx1.getXVal()),c):d===this.pin1Dy01?c=JU.DF.formatDecimalDbl(Math.min(this.pin1Dy0.getYVal(),this.pin1Dy1.getYVal()),g)+" - "+JU.DF.formatDecimalDbl(Math.max(this.pin1Dy0.getYVal(),this.pin1Dy1.getYVal()),g):d===this.cur2Dy?(d=this.imageView.toSubspectrumIndex(d.yPixel0),c=
this.get2DYLabel(d,c)):c=d===this.pin2Dy01?""+x(Math.min(this.pin2Dy0.getYVal(),this.pin2Dy1.getYVal()))+" - "+x(Math.max(this.pin2Dy0.getYVal(),this.pin2Dy1.getYVal())):d.isXtype?JU.DF.formatDecimalDbl(d.getXVal(),c):d.is2D?""+x(d.getYVal()):JU.DF.formatDecimalDbl(d.getYVal(),g),this.pd.setToolTipText(c));else{if(null!=this.imageView){if(this.imageView.fixX(a)==a&&this.fixY(b)==b){d=this.imageView.toSubspectrumIndex(b);c="y="+this.get2DYLabel(d,c)+" / x="+JU.DF.formatDecimalDbl(this.imageView.toX(a),
c)+" "+this.getSpectrum().getAxisLabel(!0);this.pd.setToolTipText(c);this.pd.coordStr=c;return}if(!this.pd.display1D){this.pd.setToolTipText("");this.pd.coordStr="";return}}var d=this.toX(this.fixX(a)),c=null!=this.imageView&&this.imageView.isXWithinRange(a)?this.imageView.toSubspectrumIndex(this.fixY(b)):this.toY(this.fixY(b)),g=this.setCoordStr(d,c),e=this.getFixedSelectedSpectrumIndex();this.isInPlotRegion(a,b)?1!=this.nSpectra&&this.haveIntegralDisplayed(e)&&(c=this.getIntegrationGraph(e).getPercentYValueAt(d),
g+=", "+JU.DF.formatDecimalDbl(c,1)):c=NaN;this.pd.setToolTipText(null!=this.selectedIntegral?"click to set value":null!=this.pendingMeasurement||null!=this.selectedMeasurement?this.pd.hasFocus()?"Press ESC to delete "+(null!=this.selectedIntegral?"integral, DEL to delete all visible, or N to normalize":null==this.pendingMeasurement?'"'+this.selectedMeasurement.text+'" or DEL to delete all visible':"measurement"):"":Double.isNaN(c)?null:g)}}},"~N,~N");c(c$,"isFrameBox",function(a,b,d,c){return 5>
Math.abs(a-(d+5))&&5>Math.abs(b-(c+5))},"~N,~N,~N,~N");c(c$,"setCoordStr",function(a,b){var d=JU.DF.formatDecimalDbl(a,this.getScale().precision[0]);this.pd.coordStr="("+d+(this.haveSingleYScale||0<=this.iSpectrumSelected?", "+JU.DF.formatDecimalDbl(b,this.getScale().precision[1]):"")+")";return d},"~N,~N");c(c$,"setStartupPinTip",function(){if(null==this.pd.startupPinTip)return!1;this.pd.setToolTipText(this.pd.startupPinTip);this.pd.startupPinTip=null;return!0});c(c$,"get2DYLabel",function(a,b){var d=
this.getSpectrumAt(0).getSubSpectra().get(a);return JU.DF.formatDecimalDbl(d.getY2DPPM(),b)+" PPM"+(d.y2DUnits.equals("HZ")?" ("+JU.DF.formatDecimalDbl(d.getY2D(),b)+" HZ) ":"")},"~N,~N");c(c$,"isOnSpectrum",function(a,b,d){var c=null,g=!0,e=0>d;if(e){c=this.getDialog(JSV.common.Annotation.AType.Integration,-1);if(null==c)return!1;c=c.getData().getXYCoords();d=this.getFixedSelectedSpectrumIndex()}else{this.setScale(d);var t=this.spectra.get(d),c=t.xyCoords,g=t.isContinuous()}var t=d*G(this.yPixels*
(this.yStackOffsetPercent/100)),k=this.viewData.getStartingPointIndex(d);d=this.viewData.getEndingPointIndex(d);if(g)for(g=k;g<d;g++){var l=c[g],j=c[g+1],k=this.toPixelX(l.getXVal()),m=this.toPixelX(j.getXVal()),l=e?this.toPixelYint(l.getYVal()):this.toPixelY(l.getYVal()),j=e?this.toPixelYint(j.getYVal()):this.toPixelY(j.getYVal());if(!(-2147483648==l||-2147483648==j))if(l=this.fixY(l)-t,j=this.fixY(j)-t,JSV.common.GraphSet.isOnLine(a,b,k,l,m,j))return!0}else for(g=k;g<=d;g++)if(e=c[g],j=this.toPixelY(e.getYVal()),
-2147483648!=j&&(k=this.toPixelX(e.getXVal()),l=this.toPixelY(Math.max(this.getScale().minYOnScale,0)),l=this.fixY(l),j=this.fixY(j),!(l==j&&(l==this.yPixel0||l==this.yPixel1))&&JSV.common.GraphSet.isOnLine(a,b,k,l,k,j)))return!0;return!1},"~N,~N,~N");c$.distance=c(c$,"distance",function(a,b){return Math.sqrt(a*a+b*b)},"~N,~N");c$.findCompatibleGraphSet=c(c$,"findCompatibleGraphSet",function(a,b){for(var d=0;d<a.size();d++)if(JSV.common.Spectrum.areXScalesCompatible(b,a.get(d).getSpectrum(),!1,!1))return a.get(d);
return null},"JU.Lst,JSV.common.Spectrum");c$.isGoodEvent=c(c$,"isGoodEvent",function(a,b,d){return null==b?5<Math.abs(a.xPixel1-a.xPixel0)&&5<Math.abs(a.yPixel1-a.yPixel0):d?5<Math.abs(a.xPixel0-b.xPixel0):5<Math.abs(a.yPixel0-b.yPixel0)},"JSV.common.PlotWidget,JSV.common.PlotWidget,~B");c$.isOnLine=c(c$,"isOnLine",function(a,b,d,c,g,e){var t=Math.abs(d-a);if(2>t&&2>Math.abs(c-b))return!0;var k=g-a;if(2>Math.abs(k)&&2>Math.abs(e-b))return!0;var l=c-e;if(2<Math.abs(l)&&c<b==e<b)return!1;var j=d-g;
return 2<Math.abs(j)&&d<a==g<a?!1:JSV.common.GraphSet.distance(t,c-b)+JSV.common.GraphSet.distance(k,b-e)<JSV.common.GraphSet.distance(j,l)+2},"~N,~N,~N,~N,~N,~N");c$.setFractionalPositions=c(c$,"setFractionalPositions",function(a,b,d){var c=b.size(),g=0,e=0;a.isLinked=d!==JSV.common.PanelData.LinkMode.NONE;if(d===JSV.common.PanelData.LinkMode.NONE){for(var t=0;t<c;t++)d=b.get(t),g+=(d.getSpectrumAt(0).is1D(),1)*d.nSplit;g=1/g;for(t=0;t<c;t++)d=b.get(t),d.isLinked=!1,a=d.getSpectrumAt(0).is1D()?g:
1*g,d.fX0=0,d.fY0=e,d.fracX=1,d.fracY=a,e+=a*d.nSplit}else{var g=null,k=-1;if(2==c||3==c)for(t=0;t<c;t++)if(d=b.get(t),!d.getSpectrum().is1D()){g=d;0<=k&&(t=-2);k=t;break}if(-2==k||-1==k&&2!=c)JSV.common.GraphSet.setFractionalPositions(a,b,JSV.common.PanelData.LinkMode.NONE);else for(t=0;t<c;t++)d=b.get(t),d.isLinked=!0,a=d.getSpectrumAt(0),a.is1D()?(null!=g&&(k=g.getSpectrumAt(0),JSV.common.Spectrum.areLinkableX(a,k)&&(d.gs2dLinkedX=g),JSV.common.Spectrum.areLinkableY(a,k)&&(d.gs2dLinkedY=g)),d.fX0=
0,d.fY0=e,d.fracX=null==g?1:0.5,d.fracY=3==c||null==g?0.5:1,e+=0.5):(d.fX0=0.5,d.fY0=0,d.fracX=0.5,d.fracY=1)}},"JSV.common.PanelData,JU.Lst,JSV.common.PanelData.LinkMode");c(c$,"addAnnotation",function(a,b){if(0==a.size()||1==a.size()&&a.get(0).equalsIgnoreCase("none"))return this.lastAnnotation=this.annotations=null;4>a.size()&&null==this.lastAnnotation&&(this.lastAnnotation=this.getAnnotation((this.getScale().maxXOnScale+this.getScale().minXOnScale)/2,(this.getScale().maxYOnScale+this.getScale().minYOnScale)/
2,b,!1,!1,0,0));var d=this.getAnnotation(a,this.lastAnnotation);if(null==d)return null;if(null==this.annotations&&1==a.size()&&'"'==a.get(0).charAt(0))return d=d.text,this.getSpectrum().setTitle(d),d;this.lastAnnotation=d;this.addAnnotation(d,!1);return null},"JU.Lst,~S");c(c$,"addHighlight",function(a,b,d,c){null==d&&(d=this.getSpectrumAt(0));a=I(JSV.common.GraphSet.Highlight,this,null,a,b,d,null==c?this.pd.getColor(JSV.common.ScriptToken.HIGHLIGHTCOLOR):c);this.highlights.contains(a)||this.highlights.addLast(a)},
"~N,~N,JSV.common.Spectrum,javajs.api.GenericColor");c(c$,"addPeakHighlight",function(a){for(var b=this.spectra.size();0<=--b;){var d=this.spectra.get(b);this.removeAllHighlights(d);if(!(null==a||a.isClearAll()||d!==a.spectrum)){var c=a.toString();if(null!=c){var g=JU.PT.getQuotedAttribute(c,"xMin"),c=JU.PT.getQuotedAttribute(c,"xMax");if(null==g||null==c)break;g=JU.PT.parseFloat(g);c=JU.PT.parseFloat(c);if(Float.isNaN(g)||Float.isNaN(c))break;this.pd.addHighlight(this,g,c,d,200,140,140,100);d.setSelectedPeak(a);
!this.getScale().isInRangeX(g)&&!(this.getScale().isInRangeX(c)||g<this.getScale().minX&&this.getScale().maxX<c)&&this.setZoomTo(0)}}}},"JSV.common.PeakInfo");c(c$,"advanceSubSpectrum",function(a){var b=this.getSpectrumAt(0);a=b.advanceSubSpectrum(a);b.isForcedSubset()&&this.viewData.setXRangeForSubSpectrum(this.getSpectrum().getXYCoords());this.pd.notifySubSpectrumChange(a,this.getSpectrum())},"~N");c(c$,"checkSpectrumClickedEvent",function(a,b,d){if(null!=this.nextClickForSetPeak||(1<d||null!=this.pendingMeasurement||
!this.isInPlotRegion(a,b))||0==d&&(d=this.isOnSpectrum(a,b,-1),this.pd.integralShiftMode=d?this.getShiftMode(a,b):0,this.pd.isIntegralDrag=0==this.pd.integralShiftMode&&(d||this.haveIntegralDisplayed(-1)&&null!=this.findMeasurement(this.getIntegrationGraph(-1),a,b,0)),0!=this.pd.integralShiftMode)||!this.showAllStacked)return!1;this.stackSelected=!1;for(d=0;d<this.nSpectra;d++)if(this.isOnSpectrum(a,b,d))return this.setSpectrumClicked(this.iPreviousSpectrumClicked=d),!1;if(this.isDialogOpen())return!1;
this.setSpectrumClicked(-1);return this.stackSelected=!1},"~N,~N,~N");c(c$,"getShiftMode",function(a,b){return this.isStartEndIntegral(a,!1)?b:this.isStartEndIntegral(a,!0)?-b:0},"~N,~N");c(c$,"isDialogOpen",function(){return this.isVisible(this.getDialog(JSV.common.Annotation.AType.Integration,-1))||this.isVisible(this.getDialog(JSV.common.Annotation.AType.Measurements,-1))||this.isVisible(this.getDialog(JSV.common.Annotation.AType.PeakList,-1))});c(c$,"isStartEndIntegral",function(a,b){return b?
20>this.xPixelPlot1-a:20>a-this.xPixelPlot0},"~N,~B");c(c$,"checkWidgetEvent",function(a,b,d){if(!this.triggered)return!1;this.triggered=!1;if(d){if(2==this.pd.clickCount&&this.lastIntDragX!=a&&!this.is2dClick(a,b)){if(null==this.pendingMeasurement)return-1==this.iSpectrumClicked&&0<=this.iPreviousSpectrumClicked&&this.setSpectrumClicked(this.iPreviousSpectrumClicked),this.processPendingMeasurement(a,b,2),!0}else if(!this.is2dClick(a,b)&&(this.isOnSpectrum(a,b,-1)&&this.checkIntegral(this.toX(a),
NaN,!1),this.lastIntDragX==a&&(this.pd.isIntegralDrag=!0,!this.checkIntegral(this.toX(a),this.toX(a),!1))))return!1;if(null!=this.pendingMeasurement)return!0;d=this.getPinSelected(a,b);null==d&&(b=this.fixY(b),a<this.xPixel1?(this.pd.shiftPressed&&this.setSpectrumClicked(this.iPreviousSpectrumClicked),a=this.fixX(a),null==this.zoomBox1D&&this.newPins(),this.zoomBox1D.setX(this.toX(a),a),this.zoomBox1D.yPixel0=b,d=this.zoomBox1D):null!=this.imageView&&a<this.imageView.xPixel1&&(this.zoomBox2D.setX(this.imageView.toX(a),
this.imageView.fixX(a)),this.zoomBox2D.yPixel0=b,d=this.zoomBox2D));this.pd.thisWidget=d;return!1}this.nextClickForSetPeak=null;d=this.pd.thisWidget;if(null==d)return!1;if(d===this.zoomBox1D)return this.zoomBox1D.xPixel1=this.fixX(a),this.zoomBox1D.yPixel1=this.fixY(b),this.pd.isIntegralDrag&&this.zoomBox1D.xPixel0!=this.zoomBox1D.xPixel1&&(this.lastIntDragX<=a!=this.zoomBox1D.xPixel0<=a&&(this.zoomBox1D.xPixel0=this.lastIntDragX,this.zoomBox1D.xPixel1=a,this.zoomBox1D.setXVal(this.toX(this.zoomBox1D.xPixel0))),
this.lastIntDragX=a,this.checkIntegral(this.zoomBox1D.getXVal(),this.toX(this.zoomBox1D.xPixel1),!1)),!1;if(!this.zoomEnabled)return!1;if(d===this.zoomBox2D)return this.zoomBox2D.xPixel1=this.imageView.fixX(a),this.zoomBox2D.yPixel1=this.fixY(b),!0;if(d===this.cur2Dy)return b=this.fixY(b),this.cur2Dy.yPixel0=this.cur2Dy.yPixel1=b,this.setCurrentSubSpectrum(this.imageView.toSubspectrumIndex(b)),!0;if(d===this.cur2Dx0||d===this.cur2Dx1)return!1;if(d===this.pin1Dx0||d===this.pin1Dx1||d===this.pin1Dx01){a=
this.fixX(a);d.setX(this.toX0(a),a);if(d===this.pin1Dx01){d=a-x((this.pin1Dx0.xPixel0+this.pin1Dx1.xPixel0)/2);a=this.pin1Dx0.xPixel0+d;b=this.pin1Dx1.xPixel0+d;if(0==d||this.fixX(a)!=a||this.fixX(b)!=b)return!0;this.pin1Dx0.setX(this.toX0(a),a);this.pin1Dx1.setX(this.toX0(b),b)}this.doZoom(this.pin1Dx0.getXVal(),0,this.pin1Dx1.getXVal(),0,!0,!1,!1,!0,!1);return!0}if(d===this.pin1Dy0||d===this.pin1Dy1||d===this.pin1Dy01){b=this.fixY(b);d.setY(this.toY0(b),b);if(d===this.pin1Dy01){d=b-x((this.pin1Dy0.yPixel0+
this.pin1Dy1.yPixel0)/2)+1;b=this.pin1Dy0.yPixel0+d;a=this.pin1Dy1.yPixel0+d;d=this.toY0(b);var c=this.toY0(a);if(Math.min(d,c)==this.getScale().minY||Math.max(d,c)==this.getScale().maxY)return!0;this.pin1Dy0.setY(d,b);this.pin1Dy1.setY(c,a)}this.doZoom(0,this.pin1Dy0.getYVal(),0,this.pin1Dy1.getYVal(),null==this.imageView,null==this.imageView,!1,!1,!1);return!0}if(d===this.pin2Dx0||d===this.pin2Dx1||d===this.pin2Dx01){a=this.imageView.fixX(a);d.setX(this.imageView.toX0(a),a);if(d===this.pin2Dx01){d=
a-x((this.pin2Dx0.xPixel0+this.pin2Dx1.xPixel0)/2)+1;a=this.pin2Dx0.xPixel0+d;b=this.pin2Dx1.xPixel0+d;if(this.imageView.fixX(a)!=a||this.imageView.fixX(b)!=b)return!0;this.pin2Dx0.setX(this.imageView.toX0(a),a);this.pin2Dx1.setX(this.imageView.toX0(b),b)}if(!JSV.common.GraphSet.isGoodEvent(this.pin2Dx0,this.pin2Dx1,!0))return this.reset2D(!0),!0;this.imageView.setView0(this.pin2Dx0.xPixel0,this.pin2Dy0.yPixel0,this.pin2Dx1.xPixel0,this.pin2Dy1.yPixel0);this.doZoom(this.pin2Dx0.getXVal(),this.getScale().minY,
this.pin2Dx1.getXVal(),this.getScale().maxY,!1,!1,!1,!0,!1);return!0}if(d===this.pin2Dy0||d===this.pin2Dy1||d===this.pin2Dy01){b=this.fixY(b);d.setY(this.imageView.toSubspectrumIndex(b),b);if(d===this.pin2Dy01){d=b-x((this.pin2Dy0.yPixel0+this.pin2Dy1.yPixel0)/2)+1;b=this.pin2Dy0.yPixel0+d;a=this.pin2Dy1.yPixel0+d;if(b!=this.fixY(b)||a!=this.fixY(a))return!0;this.pin2Dy0.setY(this.imageView.toSubspectrumIndex(b),b);this.pin2Dy1.setY(this.imageView.toSubspectrumIndex(a),a)}if(!JSV.common.GraphSet.isGoodEvent(this.pin2Dy0,
this.pin2Dy1,!1))return this.reset2D(!1),!0;this.imageView.setView0(this.pin2Dx0.xPixel0,this.pin2Dy0.yPixel0,this.pin2Dx1.xPixel1,this.pin2Dy1.yPixel1);return!0}return!1},"~N,~N,~B");c(c$,"clearIntegrals",function(){this.checkIntegral(NaN,0,!1)});c(c$,"clearMeasurements",function(){this.removeDialog(this.getFixedSelectedSpectrumIndex(),JSV.common.Annotation.AType.Measurements)});c$.createGraphSetsAndSetLinkMode=c(c$,"createGraphSetsAndSetLinkMode",function(a,b,d,c,g,e){for(var t=new JU.Lst,k=0;k<
d.size();k++){var l=d.get(k),j=e===JSV.common.PanelData.LinkMode.NONE?JSV.common.GraphSet.findCompatibleGraphSet(t,l):null;null==j&&t.addLast(j=new JSV.common.GraphSet(b.getPanelData()));j.addSpec(l)}JSV.common.GraphSet.setFractionalPositions(a,t,e);for(k=t.size();0<=--k;)t.get(k).initGraphSet(c,g),JU.Logger.info("JSVGraphSet "+(k+1)+" nSpectra = "+t.get(k).nSpectra);return t},"JSV.common.PanelData,JSV.api.JSVPanel,JU.Lst,~N,~N,JSV.common.PanelData.LinkMode");c(c$,"drawGraphSet",function(a,b,d,c,
g,e,t,k,l,j,m){this.zoomEnabled=this.pd.getBoolean(JSV.common.ScriptToken.ENABLEZOOM);this.height=g*this.pd.scalingFactor;this.width=c*this.pd.scalingFactor;this.left=e*this.pd.scalingFactor;this.right=t*this.pd.scalingFactor;this.top=k*this.pd.scalingFactor;this.bottom=l*this.pd.scalingFactor;this.$haveSelectedSpectrum=!1;this.selectedSpectrumMeasurements=this.selectedSpectrumIntegrals=null;if(!this.pd.isPrinting&&null!=this.widgets)for(c=0;c<this.widgets.length;c++)null!=this.widgets[c]&&(this.widgets[c].isVisible=
!1);for(c=0;c<this.nSplit;c++)this.setPositionForFrame(c),this.drawAll(a,b,d,c,j||1<this.nSplit,m);this.setPositionForFrame(1<this.nSplit?this.pd.currentSplitPoint:0)},"~O,~O,~O,~N,~N,~N,~N,~N,~N,~B,~B");c(c$,"escapeKeyPressed",function(a){null!=this.zoomBox1D&&(this.zoomBox1D.xPixel0=this.zoomBox1D.xPixel1=0);null!=this.zoomBox2D&&(this.zoomBox2D.xPixel0=this.zoomBox2D.xPixel1=0);this.inPlotMove&&(null!=this.pendingMeasurement?this.pendingMeasurement=null:(this.pendingMeasurement=this.pd.thisWidget=
null,null!=this.selectedSpectrumMeasurements&&null!=this.selectedMeasurement&&(a?this.selectedSpectrumMeasurements.clear(this.getScale().minXOnScale,this.getScale().maxXOnScale):this.selectedSpectrumMeasurements.removeObj(this.selectedMeasurement),this.selectedMeasurement=null,this.updateDialog(JSV.common.Annotation.AType.Measurements,-1)),null!=this.selectedSpectrumIntegrals&&null!=this.selectedIntegral&&(a?this.selectedSpectrumIntegrals.clear(this.getScale().minXOnScale,this.getScale().maxXOnScale):
this.selectedSpectrumIntegrals.removeObj(this.selectedIntegral),this.selectedIntegral=null,this.updateDialog(JSV.common.Annotation.AType.Integration,-1))))},"~B");c$.findGraphSet=c(c$,"findGraphSet",function(a,b,d){for(var c=a.size();0<=--c;)if(a.get(c).hasPoint(b,d))return a.get(c);return null},"JU.Lst,~N,~N");c(c$,"findMatchingPeakInfo",function(a){for(var b=null,d=0;d<this.spectra.size()&&null==(b=this.spectra.get(d).findMatchingPeakInfo(a));d++);return b},"JSV.common.PeakInfo");c(c$,"getCurrentSpectrumIndex",
function(){return 1==this.nSpectra?0:this.iSpectrumSelected});c(c$,"getSelectedIntegral",function(){return this.selectedIntegral});c(c$,"getShowAnnotation",function(a,b){var d=this.getDialog(a,b);return null!=d&&d.getState()},"JSV.common.Annotation.AType,~N");c(c$,"hasFileLoaded",function(a){for(var b=this.spectra.size();0<=--b;)if(this.spectra.get(b).getFilePathForwardSlash().equals(a))return!0;return!1},"~S");c(c$,"haveSelectedSpectrum",function(){return this.$haveSelectedSpectrum});c(c$,"mouseClickedEvent",
function(a,b,d,c){this.selectedIntegral=this.selectedMeasurement=null;var g=this.nextClickForSetPeak;this.nextClickForSetPeak=null;if(!this.checkArrowUpDownClick(a,b)&&!this.checkArrowLeftRightClick(a,b))if(this.lastClickX=NaN,this.lastPixelX=2147483647,this.isSplitWidget(a,b))this.splitStack(1==this.nSplit);else if(this.isCloserWidget(a,b))this.pd.closeSpectrum();else{var e=this.getPinSelected(a,b);if(null!=e)this.setWidgetValueByUser(e);else if(e=this.is2dClick(a,b),2==d&&(-1==this.iSpectrumClicked&&
0<=this.iPreviousSpectrumClicked)&&this.setSpectrumClicked(this.iPreviousSpectrumClicked),!e&&c)this.setSpectrumClicked(this.iPreviousSpectrumClicked),null!=this.pendingMeasurement?this.processPendingMeasurement(a,b,-3):0<=this.iSpectrumClicked&&this.processPendingMeasurement(a,b,3);else if(this.lastXMax=NaN,2==d)e?(this.sticky2Dcursor&&this.addAnnotation(this.getAnnotation(this.imageView.toX(a),this.imageView.toSubspectrumIndex(b),this.pd.coordStr,!1,!0,5,5),!0),this.sticky2Dcursor=!0,this.set2DCrossHairs(a,
b)):this.isInTopBar(a,b)?this.doZoom(this.toX0(this.xPixel0),0,this.toX0(this.xPixel1),0,!0,!1,!1,!0,!0):this.isInRightBar(a,b)?this.doZoom(this.getScale().minXOnScale,this.viewList.get(0).getScale().minYOnScale,this.getScale().maxXOnScale,this.viewList.get(0).getScale().maxYOnScale,!0,!0,!1,!1,!1):this.isInTopBar2D(a,b)?this.reset2D(!0):this.isInRightBar2D(a,b)?this.reset2D(!1):null!=this.pendingMeasurement?this.processPendingMeasurement(a,b,-2):0<=this.iSpectrumClicked&&this.processPendingMeasurement(a,
b,2);else if(e){if(null!=this.annotations&&(c=(new JSV.common.Coordinate).set(this.imageView.toX(a),this.imageView.toSubspectrumIndex(b)),c=this.findAnnotation2D(c),null!=c&&this.setAnnotationText(c)))return;1==d&&(this.sticky2Dcursor=!1);this.set2DCrossHairs(a,b)}else{if(this.isInPlotRegion(a,b)){if(null!=this.selectedSpectrumIntegrals&&this.checkIntegralNormalizationClick(a,b))return;if(null!=this.pendingMeasurement){this.processPendingMeasurement(a,b,1);return}this.setCoordClicked(a,this.toX(a),
this.toY(b));this.updateDialog(JSV.common.Annotation.AType.PeakList,-1);if(null!=g){this.nextClickForSetPeak=g;this.shiftSpectrum(4,NaN,NaN);this.nextClickForSetPeak=null;return}}else this.setCoordClicked(0,NaN,0);this.pd.notifyPeakPickedListeners(null)}}},"~N,~N,~N,~B");c(c$,"is2dClick",function(a,b){return null!=this.imageView&&a==this.imageView.fixX(a)&&b==this.fixY(b)},"~N,~N");c(c$,"updateDialog",function(a,b){var d=this.getDialog(a,b);if(null!=d&&this.isVisible(d)){var c=this.toX(this.xPixel1)-
this.toX(this.xPixel0),g=this.getSpectrum().isInverted()?this.yPixel1-this.pd.mouseY:this.pd.mouseY-this.yPixel0;d.update(this.pd.coordClicked,c,g)}},"JSV.common.Annotation.AType,~N");c(c$,"isVisible",function(a){return v(a,JSV.dialog.JSVDialog)&&a.isVisible()},"JSV.api.AnnotationData");c(c$,"mousePressedEvent",function(a,b){this.checkWidgetEvent(a,b,!0)},"~N,~N,~N");c(c$,"mouseReleasedEvent",function(a,b){if(null!=this.pendingMeasurement)2>Math.abs(this.toPixelX(this.pendingMeasurement.getXVal())-
a)&&(this.pendingMeasurement=null),this.processPendingMeasurement(a,b,-2),this.setToolTipForPixels(a,b);else if(0!=this.pd.integralShiftMode)this.pd.integralShiftMode=0,this.zoomBox1D.xPixel1=this.zoomBox1D.xPixel0;else{0<=this.iSpectrumMovedTo&&this.setScale(this.iSpectrumMovedTo);var d=this.pd.thisWidget;if(this.pd.isIntegralDrag)JSV.common.GraphSet.isGoodEvent(this.zoomBox1D,null,!0)&&this.checkIntegral(this.toX(this.zoomBox1D.xPixel0),this.toX(this.zoomBox1D.xPixel1),!0),this.zoomBox1D.xPixel1=
this.zoomBox1D.xPixel0=0,this.pendingIntegral=null,this.pd.isIntegralDrag=!1;else if(d===this.zoomBox2D)JSV.common.GraphSet.isGoodEvent(this.zoomBox2D,null,!0)&&(this.imageView.setZoom(this.zoomBox2D.xPixel0,this.zoomBox2D.yPixel0,this.zoomBox2D.xPixel1,this.zoomBox2D.yPixel1),this.zoomBox2D.xPixel1=this.zoomBox2D.xPixel0,this.doZoom(this.imageView.toX(this.imageView.xPixel0),this.getScale().minY,this.imageView.toX(this.imageView.xPixel0+this.imageView.xPixels-1),this.getScale().maxY,!1,!1,!1,!0,
!0));else if(d===this.zoomBox1D){if(JSV.common.GraphSet.isGoodEvent(this.zoomBox1D,null,!0)){var d=this.zoomBox1D.xPixel1,c=this.pd.shiftPressed;this.doZoom(this.toX(this.zoomBox1D.xPixel0),c?this.toY(this.zoomBox1D.yPixel0):0,this.toX(d),c?this.toY(this.zoomBox1D.yPixel1):0,!0,c,!0,!0,!0);this.zoomBox1D.xPixel1=this.zoomBox1D.xPixel0}}else(d===this.pin1Dx0||d===this.pin1Dx1||d===this.cur2Dx0||d===this.cur2Dx1)&&this.addCurrentZoom()}},"~N,~N");c(c$,"mouseMovedEvent",function(a,b){if(1<this.nSpectra){var d=
this.getSplitPoint(b);this.setPositionForFrame(d);this.setSpectrumMovedTo(1<this.nSplit?d:this.iSpectrumSelected);0<=this.iSpectrumMovedTo&&this.setScale(this.iSpectrumMovedTo)}this.inPlotMove=this.isInPlotRegion(a,b);this.setXPixelMovedTo(1.7976931348623157E308,1.7976931348623157E308,this.inPlotMove?a:-1,-1);this.inPlotMove&&(this.xValueMovedTo=this.toX(this.xPixelMovedTo),this.yValueMovedTo=this.getSpectrum().getYValueAt(this.xValueMovedTo));if(0!=this.pd.integralShiftMode){var d=this.getDialog(JSV.common.Annotation.AType.Integration,
-1),c=d.getData().getXYCoords(),c=c[0<this.pd.integralShiftMode?c.length-1:0].getYVal();d.getData().shiftY(this.pd.integralShiftMode,this.toPixelYint(c)+b-(0<this.pd.integralShiftMode?this.yPixelPlot1:this.yPixelPlot0),this.yPixel0,this.yPixels)}else this.pd.isIntegralDrag||(null!=this.pendingMeasurement?(this.processPendingMeasurement(a,b,0),this.setToolTipForPixels(a,b)):(this.selectedMeasurement=this.inPlotMove&&null!=this.selectedSpectrumMeasurements?this.findMeasurement(this.selectedSpectrumMeasurements,
a,b,0):null,this.selectedIntegral=null,this.inPlotMove&&(null!=this.selectedSpectrumIntegrals&&null==this.selectedMeasurement)&&(this.selectedIntegral=this.findMeasurement(this.selectedSpectrumIntegrals,a,b,0),null==this.selectedIntegral&&(this.selectedIntegral=this.findMeasurement(this.selectedSpectrumIntegrals,a,b,-5))),this.setToolTipForPixels(a,b),null==this.imageView?(this.piMouseOver=null,d=1<this.nSplit?this.iSpectrumMovedTo:this.iSpectrumClicked,!this.isDrawNoSpectra()&&0<=d&&(d=this.spectra.get(d),
null!=d.getPeakList()&&(this.coordTemp.setXVal(this.toX(a)),this.coordTemp.setYVal(this.toY(b)),this.piMouseOver=d.findPeakByCoord(a,this.coordTemp)))):!this.pd.display1D&&this.sticky2Dcursor&&this.set2DCrossHairs(a,b)))},"~N,~N");c(c$,"nextView",function(){this.currentZoomIndex+1<this.viewList.size()&&this.setZoomTo(this.currentZoomIndex+1)});c(c$,"previousView",function(){0<this.currentZoomIndex&&this.setZoomTo(this.currentZoomIndex-1)});c(c$,"resetView",function(){this.setZoomTo(0)});c(c$,"removeAllHighlights",
function(){this.removeAllHighlights(null)});c(c$,"removeHighlight",function(a){this.highlights.removeItemAt(a)},"~N");c(c$,"removeHighlight",function(a,b){for(var d=this.highlights.size();0<=--d;){var c=this.highlights.get(d);c.x1==a&&c.x2==b&&this.highlights.removeItemAt(d)}},"~N,~N");c(c$,"scaleYBy",function(a){if(null!=this.imageView||this.zoomEnabled)this.viewData.scaleSpectrum(null==this.imageView?this.iSpectrumSelected:-2,a),null!=this.imageView&&(this.update2dImage(!1),this.resetPinsFromView()),
this.pd.refresh()},"~N");c(c$,"selectSpectrum",function(a,b,d){for(var c=!1,g=this.spectra.size();0<=--g;)if((null==a||this.getSpectrumAt(g).getFilePathForwardSlash().equals(a))&&this.getSpectrumAt(g).matchesPeakTypeModel(b,d))this.setSpectrumSelected(g),1<this.nSplit&&this.splitStack(!0),c=!0;1<this.nSpectra&&(!c&&0<=this.iSpectrumSelected&&!this.pd.isCurrentGraphSet(this))&&this.setSpectrumSelected(-2147483648);return c},"~S,~S,~S");c(c$,"selectPeakByFileIndex",function(a,b,d){for(var c,g=this.spectra.size();0<=
--g;)if(null!=(c=this.getSpectrumAt(g).selectPeakByFileIndex(a,b,d)))return c;return null},"~S,~S,~S");c(c$,"setSelected",function(a){0>a?(this.bsSelected.clearAll(),this.setSpectrumClicked(-1)):(this.bsSelected.set(a),this.setSpectrumClicked(1==this.bsSelected.cardinality()?a:-1),1<this.nSplit&&0<=a&&(this.pd.currentSplitPoint=a))},"~N");c(c$,"setSelectedIntegral",function(a){var b=this.selectedIntegral.getSpectrum();this.getIntegrationGraph(this.getSpectrumIndex(b)).setSelectedIntegral(this.selectedIntegral,
a)},"~N");c(c$,"setShowAnnotation",function(a,b){var d=this.getDialog(a,-1);if(null==d)null!=b&&b!==Boolean.TRUE||(a===JSV.common.Annotation.AType.PeakList||a===JSV.common.Annotation.AType.Integration||a===JSV.common.Annotation.AType.Measurements)&&this.pd.showDialog(a);else if(null==b)v(d,JSV.dialog.JSVDialog)?d.setVisible(!d.isVisible()):this.pd.showDialog(a);else{var c=b.booleanValue();c&&d.setState(c);(c||v(d,JSV.dialog.JSVDialog))&&this.pd.showDialog(a);!c&&v(d,JSV.dialog.JSVDialog)&&d.setVisible(!1)}},
"JSV.common.Annotation.AType,Boolean");c(c$,"checkIntegralParams",function(a,b){if(!this.getSpectrum().canIntegrate()||this.reversePlot)return!1;var d=this.getFixedSelectedSpectrumIndex(),c=this.getDialog(JSV.common.Annotation.AType.Integration,-1);if(null==b)return!0;switch(JSV.common.IntegralData.IntMode.getMode(b.toUpperCase())){case JSV.common.IntegralData.IntMode.NA:return!1;case JSV.common.IntegralData.IntMode.CLEAR:this.integrate(d,null);this.integrate(d,a);break;case JSV.common.IntegralData.IntMode.ON:null==
c?this.integrate(d,a):c.setState(!0);break;case JSV.common.IntegralData.IntMode.OFF:null!=c&&c.setState(!1);break;case JSV.common.IntegralData.IntMode.TOGGLE:null==c?this.integrate(d,a):c.setState(!c.getState());break;case JSV.common.IntegralData.IntMode.AUTO:null==c&&(this.checkIntegralParams(a,"ON"),c=this.getDialog(JSV.common.Annotation.AType.Integration,-1));null!=c&&c.getData().autoIntegrate();break;case JSV.common.IntegralData.IntMode.LIST:this.pd.showDialog(JSV.common.Annotation.AType.Integration);
break;case JSV.common.IntegralData.IntMode.MARK:null==c&&(this.checkIntegralParams(a,"ON"),c=this.getDialog(JSV.common.Annotation.AType.Integration,-1));null!=c&&c.getData().addMarks(b.substring(4).trim());break;case JSV.common.IntegralData.IntMode.MIN:if(null!=c)try{var g=Double.parseDouble(JSV.common.ScriptToken.getTokens(b).get(1));c.getData().setMinimumIntegral(g)}catch(e){if(!y(e,Exception))throw e;}break;case JSV.common.IntegralData.IntMode.UPDATE:null!=c&&c.getData().update(a)}this.updateDialog(JSV.common.Annotation.AType.Integration,
-1);return!0},"JSV.common.Parameters,~S");c(c$,"setSpectrum",function(a,b){b&&1<this.nSplit?1<this.nSplit&&this.setSpectrumClicked(a):(this.setSpectrumClicked(a),this.showAllStacked=this.stackSelected=!1);0<=a&&this.dialogsToFront(this.getSpectrum())},"~N,~B");c(c$,"setSpectrumJDX",function(a){var b=this.getFixedSelectedSpectrumIndex();this.spectra.removeItemAt(b);this.spectra.add(b,a);this.pendingMeasurement=null;this.clearViews();this.viewData.newSpectrum(this.spectra)},"JSV.common.Spectrum");c(c$,
"setZoom",function(a,b,d,c){this.setZoomTo(0);0==a&&0==d&&0==b&&0==c?(this.newPins(),this.imageView=null,this.getScale(),this.getScale()):this.doZoom(a,b,d,c,!0,b!=c,!1,!0,!0)},"~N,~N,~N,~N");c(c$,"shiftSpectrum",function(a,b,d){var c=this.getSpectrum();if(!c.isNMR()||!c.is1D())return!1;var g=null,g=0;if(1.7976931348623157E308==d)g=-c.addSpecShift(0);else switch(a){case 3:g=d;break;case 1:case 2:this.nextClickMode=a;if(Double.isNaN(b))return g=this.pd.getInput("Click on "+(1==a?"or beside a peak to set its chemical shift":
"the spectrum set the chemical shift at that point")+(-2147483648==d?"":" to "+d)+".","Set Reference "+(1==a?"for Peak":"at Point"),"OK"),this.nextClickForSetPeak="OK".equals(g)?Double.$valueOf(d):null,!1;this.nextClickForSetPeak=null;case 4:null!=this.nextClickForSetPeak&&(d=this.nextClickForSetPeak.doubleValue(),this.nextClickForSetPeak=null);Double.isNaN(b)&&(b=this.lastClickX);1==this.nextClickMode&&(b=this.getNearestPeak(c,b,this.toY(this.pd.mouseY)));if(Double.isNaN(d))try{var e=this.pd.getInput("New chemical shift (set blank to reset)",
"Set Reference",JU.DF.formatDecimalDbl(b,this.getScale().precision[0])).trim();d=0==e.length?b-c.addSpecShift(0):Double.parseDouble(e)}catch(t){if(y(t,Exception))return!1;throw t;}g=d-b}if(0==g)return!1;c.addSpecShift(g);if(null!=this.annotations)for(a=this.annotations.size();0<=--a;)this.annotations.get(a).spec===c&&this.annotations.get(a).addSpecShift(g);if(null!=this.dialogs){var k;for(a=this.dialogs.entrySet().iterator();a.hasNext()&&((k=a.next())||1);)k.getValue().getSpectrum()===c&&k.getValue().setSpecShift(g)}this.getScale().addSpecShift(g);
Double.isNaN(this.lastClickX)||(this.lastClickX+=g);this.updateDialogs();this.doZoom(0,this.getScale().minYOnScale,0,this.getScale().maxYOnScale,!0,!0,!1,!0,!1);this.pd.setTaintedAll();this.pd.repaint();return!0},"~N,~N,~N");c(c$,"toPeak",function(a){a*=this.drawXAxisLeftToRight?1:-1;Double.isNaN(this.lastClickX)&&(this.lastClickX=this.lastPixelX=0);var b=this.getSpectrum(),d=this.setCoordClicked(this.lastPixelX,this.lastClickX,0);a=b.setNextPeak(d,a);0>a||(a=b.getPeakList().get(a),b.setSelectedPeak(a),
this.setCoordClicked(a.getXPixel(),a.getX(),0),this.pd.notifyPeakPickedListeners(new JSV.common.PeakPickEvent(this.jsvp,this.pd.coordClicked,a)))},"~N");c(c$,"scaleSelectedBy",function(a){for(var b=this.bsSelected.nextSetBit(0);0<=b;b=this.bsSelected.nextSetBit(b+1))this.viewData.scaleSpectrum(b,a)},"~N");e(c$,"toString",function(){return"gs: "+this.nSpectra+" "+this.spectra+" "+this.spectra.get(0).getFilePath()});c(c$,"setXPointer",function(a,b){null!=a&&this.setSpectrumClicked(this.getSpectrumIndex(a));
this.xValueMovedTo=this.lastClickX=b;this.lastPixelX=this.toPixelX(b);this.setXPixelMovedTo(b,1.7976931348623157E308,0,0);this.yValueMovedTo=NaN},"JSV.common.Spectrum,~N");c(c$,"setXPointer2",function(a,b){null!=a&&this.setSpectrumClicked(this.getSpectrumIndex(a));this.setXPixelMovedTo(1.7976931348623157E308,b,0,0)},"JSV.common.Spectrum,~N");c(c$,"hasCurrentMeasurement",function(a){return null!=(a===JSV.common.Annotation.AType.Integration?this.selectedSpectrumIntegrals:this.selectedSpectrumMeasurements)},
"JSV.common.Annotation.AType");c(c$,"getDialog",function(a,b){-1==b&&(b=this.getCurrentSpectrumIndex());return null==this.dialogs||0>b?null:this.dialogs.get(a+"_"+b)},"JSV.common.Annotation.AType,~N");c(c$,"removeDialog",function(a,b){null!=this.dialogs&&0<=a&&this.dialogs.remove(b+"_"+a)},"~N,JSV.common.Annotation.AType");c(c$,"addDialog",function(a,b,d){null==this.dialogs&&(this.dialogs=new java.util.Hashtable);a=b+"_"+a;d.setGraphSetKey(a);this.dialogs.put(a,d);return d},"~N,JSV.common.Annotation.AType,JSV.api.AnnotationData");
c(c$,"removeDialog",function(a){var b=a.getGraphSetKey();this.dialogs.remove(b);a=a.getData();null!=a&&this.dialogs.put(b,a)},"JSV.dialog.JSVDialog");c(c$,"getPeakListing",function(a,b,d){0>a&&(a=this.getCurrentSpectrumIndex());if(0>a)return null;var c=this.getDialog(JSV.common.Annotation.AType.PeakList,-1);if(null==c){if(!d)return null;this.addDialog(a,JSV.common.Annotation.AType.PeakList,c=new JSV.common.PeakData(JSV.common.Annotation.AType.PeakList,this.getSpectrum()))}c.getData().setPeakList(b,
-2147483648,this.viewData.getScale());v(c,JSV.dialog.JSVDialog)&&c.setFields();return c.getData()},"~N,JSV.common.Parameters,~B");c(c$,"setPeakListing",function(a){var b=this.getDialog(JSV.common.Annotation.AType.PeakList,-1),d=v(b,JSV.dialog.JSVDialog)?b:null;(null==a?null==d||!d.isVisible():a.booleanValue())?this.pd.showDialog(JSV.common.Annotation.AType.PeakList):v(b,JSV.dialog.JSVDialog)&&b.setVisible(!1)},"Boolean");c(c$,"haveIntegralDisplayed",function(a){a=this.getDialog(JSV.common.Annotation.AType.Integration,
a);return null!=a&&a.getState()},"~N");c(c$,"getIntegrationGraph",function(a){a=this.getDialog(JSV.common.Annotation.AType.Integration,a);return null==a?null:a.getData()},"~N");c(c$,"setIntegrationRatios",function(a){var b=this.getFixedSelectedSpectrumIndex();null==this.aIntegrationRatios&&(this.aIntegrationRatios=Array(this.nSpectra));this.aIntegrationRatios[b]=JSV.common.IntegralData.getIntegrationRatiosFromString(this.getSpectrum(),a)},"~S");c(c$,"getIntegrationRatios",function(a){return null==
this.aIntegrationRatios?null:this.aIntegrationRatios[a]},"~N");c(c$,"integrate",function(a,b){var d=this.getSpectrumAt(a);if(null==b||!d.canIntegrate())return this.removeDialog(a,JSV.common.Annotation.AType.Integration),!1;this.addDialog(a,JSV.common.Annotation.AType.Integration,new JSV.common.IntegralData(d,b));return!0},"~N,JSV.common.Parameters");c(c$,"getIntegration",function(a,b,d){0>a&&(a=this.getCurrentSpectrumIndex());if(0>a)return null;var c=this.getDialog(JSV.common.Annotation.AType.Integration,
-1);if(null==c){if(!d)return null;c=this.addDialog(a,JSV.common.Annotation.AType.Integration,new JSV.common.IntegralData(this.getSpectrum(),b))}return c.getData()},"~N,JSV.common.Parameters,~B");c(c$,"getMeasurementInfo",function(a,b){var d;switch(a){case JSV.common.Annotation.AType.PeakList:d=this.getPeakListing(b,null,!1);break;case JSV.common.Annotation.AType.Integration:d=this.getIntegration(b,null,!1);break;default:return null}if(null==d)return null;var c=new java.util.Hashtable;d.getInfo(c);
return c},"JSV.common.Annotation.AType,~N");c(c$,"getInfo",function(a,b){var d=new java.util.Hashtable;if("".equals(a))d.put("KEYS","viewInfo spectra");else if("viewInfo".equalsIgnoreCase(a))return this.getScale().getInfo(d);var c=new JU.Lst;d.put("spectra",c);for(var g=0;g<this.nSpectra;g++)if(!(0<=b&&g!=b)){var e=this.spectra.get(g),t=e.getInfo(a);if(0<=b&&null!=a&&(2==t.size()||a.equalsIgnoreCase("id")))return 2==t.size()&&t.remove("id"),t;JSV.common.Parameters.putInfo(a,t,"type",e.getDataType());
JSV.common.Parameters.putInfo(a,t,"titleLabel",e.getTitleLabel());JSV.common.Parameters.putInfo(a,t,"filePath",e.getFilePath().$replace("\\","/"));JSV.common.Parameters.putInfo(a,t,"PeakList",JSV.common.Parameters.isMatch(a,"PeakList")?this.getMeasurementInfo(JSV.common.Annotation.AType.PeakList,g):null);JSV.common.Parameters.putInfo(a,t,"Integration",JSV.common.Parameters.isMatch(a,"Integration")?this.getMeasurementInfo(JSV.common.Annotation.AType.Integration,g):null);if(0<=b)return t;c.addLast(t)}return d},
"~S,~N");c(c$,"getTitle",function(a){return 1==this.nSpectra||0<=this.iSpectrumSelected&&(!a||1==this.nSplit)?this.getSpectrum().getTitle():null},"~B");c(c$,"getCurrentView",function(){this.setScale(this.getFixedSelectedSpectrumIndex());return this.viewData.getScale()});c(c$,"set2DXY",function(a,b,d){var c;null!=this.gs2dLinkedX&&(c=this.toPixelX(a),c!=this.fixX(c)&&(c=-2147483648,a=1.7976931348623157E308),this.cur1D2x1.setX(a,c));null!=this.gs2dLinkedY&&(c=this.toPixelX(b),c!=this.fixX(c)&&(c=-2147483648,
b=1.7976931348623157E308),this.cur1D2x2.setX(b,c));this.cur1D2Locked=d},"~N,~N,~B");c(c$,"dialogsToFront",function(a){if(null!=this.dialogs){null==a&&(a=this.getSpectrum());for(var b,d=this.dialogs.entrySet().iterator();d.hasNext()&&((b=d.next())||1);){var c=b.getValue();this.isVisible(c)&&(null==a?c.setVisible(!0):c.setFocus(c.getSpectrum()===a))}}},"JSV.common.Spectrum");c(c$,"setPlotColors",function(a){var b=a;if(b.length>this.nSpectra)a=Array(this.nSpectra),System.arraycopy(b,0,a,0,this.nSpectra),
b=a;else if(this.nSpectra>b.length){a=Array(this.nSpectra);var d=this.nSpectra-b.length;System.arraycopy(b,0,a,0,b.length);for(var c=0,b=b.length;c<d;c++,b++)a[b]=this.generateRandomColor();b=a}this.plotColors=b},"~O");c(c$,"disposeImage",function(){null!=this.image2D&&this.image2D.parentNode.removeChild(this.image2D);this.plotColors=this.highlights=this.pd=this.jsvp=this.image2D=null});c(c$,"generateRandomColor",function(){for(;;){var a=x(255*Math.random()),b=x(255*Math.random()),d=x(255*Math.random()),
a=this.g2d.getColor3(a,b,d);if(0!=a.getRGB())return a}});c(c$,"setPlotColor0",function(a){this.plotColors[0]=a},"~O");c(c$,"getPlotColor",function(a){return a>=this.plotColors.length?null:this.plotColors[a]},"~N");c(c$,"setColorFromToken",function(a,b){null!=b&&this.g2d.setGraphicsColor(a,b===JSV.common.ScriptToken.PLOTCOLOR?this.plotColors[0]:this.pd.getColor(b))},"~O,JSV.common.ScriptToken");c(c$,"setPlotColor",function(a,b){var d;switch(b){case -3:d=JSV.common.GraphSet.veryLightGrey;break;case -2:d=
this.pd.BLACK;break;case -1:d=this.pd.getColor(JSV.common.ScriptToken.INTEGRALPLOTCOLOR);break;default:d=this.plotColors[b]}this.g2d.setGraphicsColor(a,d)},"~O,~N");c(c$,"draw2DImage",function(){null!=this.imageView&&this.g2d.drawGrayScaleImage(this.gMain,this.image2D,this.imageView.xPixel0,this.imageView.yPixel0,this.imageView.xPixel0+this.imageView.xPixels-1,this.imageView.yPixel0+this.imageView.yPixels-1,this.imageView.xView1,this.imageView.yView1,this.imageView.xView2,this.imageView.yView2)});
c(c$,"get2DImage",function(){this.imageView=new JSV.common.ImageView;this.imageView.set(this.viewList.get(0).getScale());if(!this.update2dImage(!0))return!1;this.imageView.resetZoom();return this.sticky2Dcursor=!0},"JSV.common.Spectrum");c(c$,"update2dImage",function(a){this.imageView.set(this.viewData.getScale());var b=this.getSpectrumAt(0),d=this.imageView.get2dBuffer(b,!a);if(null==d)return this.imageView=this.image2D=null,!1;a&&(d=this.imageView.adjustView(b,this.viewData),this.imageView.resetView());
this.image2D=this.g2d.newGrayScaleImage(this.gMain,this.image2D,this.imageView.imageWidth,this.imageView.imageHeight,d);this.setImageWindow();return!0},"~B");c(c$,"getAnnotation",function(a,b,d,c,g,e,t){return(new JSV.common.ColoredAnnotation).setCA(a,b,this.getSpectrum(),d,this.pd.BLACK,c,g,e,t)},"~N,~N,~S,~B,~B,~N,~N");c(c$,"getAnnotation",function(a,b){return JSV.common.Annotation.getColoredAnnotation(this.g2d,this.getSpectrum(),a,b)},"JU.Lst,JSV.common.Annotation");c(c$,"fillBox",function(a,b,
d,c,g,e){this.setColorFromToken(a,e);this.g2d.fillRect(a,Math.min(b,c),Math.min(d,g),Math.abs(b-c),Math.abs(d-g))},"~O,~N,~N,~N,~N,JSV.common.ScriptToken");c(c$,"drawBox",function(a,b,d,c,g,e){this.setColorFromToken(a,e);this.g2d.drawRect(a,Math.min(b,c),Math.min(d,g),Math.abs(b-c)-1,Math.abs(d-g)-1)},"~O,~N,~N,~N,~N,JSV.common.ScriptToken");c(c$,"drawHandle",function(a,b,d,c,g){g?this.g2d.drawRect(a,b-c,d-c,2*c,2*c):this.g2d.fillRect(a,b-c,d-c,2*c+1,2*c+1)},"~O,~N,~N,~N,~B");c(c$,"setCurrentBoxColor",
function(a){this.g2d.setGraphicsColor(a,this.pd.BLACK)},"~O");c(c$,"fillArrow",function(a,b,d,c,g){var e=1;switch(b){case 1:case 3:e=-1}d=E(-1,[d-5,d-5,d+5,d+5,d+8,d,d-8]);c=E(-1,[c+5*e,c-e,c-e,c+5*e,c+5*e,c+10*e,c+5*e]);switch(b){case 1:case 2:g?this.g2d.fillPolygon(a,c,d,7):this.g2d.drawPolygon(a,c,d,7);break;case 3:case 4:g?this.g2d.fillPolygon(a,d,c,7):this.g2d.drawPolygon(a,d,c,7)}},"~O,~N,~N,~N,~B");c(c$,"fillCircle",function(a,b,c,f){f?this.g2d.fillCircle(a,b-4,c-4,8):this.g2d.drawCircle(a,
b-4,c-4,8)},"~O,~N,~N,~B");c(c$,"setAnnotationColor",function(a,b,c){null!=c?this.setColorFromToken(a,c):(c=null,v(b,JSV.common.ColoredAnnotation)&&(c=b.getColor()),null==c&&(c=this.pd.BLACK),this.g2d.setGraphicsColor(a,c))},"~O,JSV.common.Annotation,JSV.common.ScriptToken");c(c$,"setSolutionColor",function(a,b,c){for(var f=0;f<this.nSpectra;f++){var g=this.spectra.get(f),e=b||!g.canShowSolutionColor()?-1:a.getColour(g,c);g.setFillColor(-1==e?null:this.pd.vwr.parameters.getColor1(e))}},"JSV.api.VisibleInterface,~B,~B");
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function(a,b,c){if(null!=this.peakList&&0<this.peakList.size()&&(null==c||this.sourceID.equals(b)))for(var f=0;f<this.peakList.size();f++)if(this.peakList.get(f).checkFileIndex(a,b,c))return System.out.println("selecting peak by FileIndex "+this+" "+this.peakList.get(f)),this.selectedPeak=this.peakList.get(f);return null},"~S,~S,~S");c(c$,"selectPeakByFilePathTypeModel",function(a,b,c){if(null!=this.peakList&&0<this.peakList.size())for(var f=0;f<this.peakList.size();f++)if(this.peakList.get(f).checkFileTypeModel(a,
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c(c$,"setConvertedSpectrum",function(a){this.convertedSpectrum=a},"JSV.common.Spectrum");c$.taConvert=c(c$,"taConvert",function(a,b){if(!a.isContinuous())return a;switch(b){case JSV.common.Spectrum.IRMode.NO_CONVERT:return a;case JSV.common.Spectrum.IRMode.TO_ABS:if(!a.isTransmittance())return a;break;case JSV.common.Spectrum.IRMode.TO_TRANS:if(!a.isAbsorbance())return a}var c=a.getConvertedSpectrum();return null!=c?c:a.isAbsorbance()?JSV.common.Spectrum.toT(a):JSV.common.Spectrum.toA(a)},"JSV.common.Spectrum,JSV.common.Spectrum.IRMode");
c$.toT=c(c$,"toT",function(a){if(!a.isAbsorbance())return null;var b=a.getXYCoords(),c=Array(b.length);JSV.common.Coordinate.isYInRange(b,0,4)||(b=JSV.common.Coordinate.normalise(b,0,4));for(var f=0;f<b.length;f++)c[f]=(new JSV.common.Coordinate).set(b[f].getXVal(),JSV.common.Spectrum.toTransmittance(b[f].getYVal()));return JSV.common.Spectrum.newSpectrum(a,c,"TRANSMITTANCE")},"JSV.common.Spectrum");c$.toA=c(c$,"toA",function(a){if(!a.isTransmittance())return null;for(var b=a.getXYCoords(),c=Array(b.length),
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c(c$,"getInfo",function(a){var b=new java.util.Hashtable;if("id".equalsIgnoreCase(a))return b.put(a,this.id),b;var c=null;"".equals(a)&&(c="id specShift header");b.put("id",this.id);JSV.common.Parameters.putInfo(a,b,"specShift",Double.$valueOf(this.specShift));var f="header".equals(a);if(!f&&null!=a&&null==c)for(var g=this.headerTable.size();0<=--g;){var e=this.headerTable.get(g);if(e[0].equalsIgnoreCase(a)||e[2].equalsIgnoreCase(a))return b.put(a,e[1]),b}for(var e=new java.util.Hashtable,t=this.getHeaderRowDataAsArray(),
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function(a){if(null==a)return null;var b,c=new JU.SB;try{b=JSV.common.JSVFileManager.getBufferedReaderFromName(a,null);for(var f;null!=(f=b.readLine());)c.append(f),c.appendC("\n");b.close()}catch(g){if(y(g,Exception))return null;throw g;}return c.toString()},"~S");c$.getBufferedReaderForInputStream=c(c$,"getBufferedReaderForInputStream",function(a){try{return new java.io.BufferedReader(new java.io.InputStreamReader(a,"UTF-8"))}catch(b){if(y(b,Exception))return null;throw b;}},"java.io.InputStream");
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a);var t=JSV.common.JSVFileManager.cacheGet(e);if(null!=t)return t;var k=g?null:JU.PT.rep(JSV.common.JSVFileManager.nciResolver,"%FILE",JU.PT.escapeUrl(a));if(!g&&null==(c=JSV.common.JSVFileManager.getFileAsString(k))||0<=c.indexOf("<html"))return JU.Logger.error("no MOL data returned by NCI"),null;var t=f.equals("C13"),l=JSV.common.JSVFileManager.getFileAsString((t?JSV.common.JSVFileManager.nmrdbServerC13:JSV.common.JSVFileManager.nmrdbServerH1)+c),b=(new JU.JSJSONParser).parseMap(l,!0);JSV.common.JSVFileManager.cachePut("json",
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">\n";if(t){for(var b=b.get("spectrum13C"),t=b.get("jcamp").get("value"),m=b.get("predCSNuc"),n=new JU.SB,p=m.size();0<=--p;)b=m.get(p),n.append("<Signal "),JSV.common.JSVFileManager.setAttr(n,"type","nucleus",b),null==l?JSV.common.JSVFileManager.setAttr(n,"atoms","assignment",b):n.append('atoms="').appendI(l[JU.PT.parseInt(b.get("assignment"))]).append('" '),JSV.common.JSVFileManager.setAttr(n,"multiplicity","multiplicity",b),b=b.get("integralData"),JSV.common.JSVFileManager.setAttr(n,"xMin","from",
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g&&0<f&&(a=a.substring(f+4,(a+"'").indexOf("'",f+4)));t=t.substring(0,b)+"##$MODELS=\n<Models>\n<ModelData id="+JU.PT.esc(a)+' type="MOL" src='+JU.PT.esc(k)+">\n"+c+"</ModelData>\n</Models>\n##$SIGNALS=\n"+j+"\n"+t.substring(b);JSV.common.JSVFileManager.cachePut("jcamp",t);JSV.common.JSVFileManager.cachePut(e,t);return t},"~S");c$.getAtomMap=c(c$,"getAtomMap",function(a,b){var c=JSV.common.JSVFileManager.getCoord(a),f=JSV.common.JSVFileManager.getCoord(b),g=c.length;if(g!=f.length)return null;var e=
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function(a,b,c,f){a.append(b+'="').appendO(f.get(c)).append('" ')},"JU.SB,~S,~S,java.util.Map");c$.getResource=c(c$,"getResource",function(a,b,c){var f=null;try{if(null==(f=a.getClass().getResource(b)))c[0]="Couldn't find file: "+b}catch(g){if(y(g,Exception))c[0]="Exception "+g+" in getResource "+b;else throw g;}return f},"~O,~S,~A");c$.getResourceString=c(c$,"getResourceString",function(a,b,c){a=JSV.common.JSVFileManager.getResource(a,b,c);if(null==a)return c[0]="Error loading resource "+b,null;
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"~S");c$.setDocumentBase=c(c$,"setDocumentBase",function(a,b){JSV.common.JSVFileManager.viewer=a;JSV.common.JSVFileManager.appletDocumentBase=b},"JSV.common.JSViewer,java.net.URL");c$.getSimulationType=c(c$,"getSimulationType",function(a){return 0<=a.indexOf("C13/")?"C13":"H1"},"~S");D(c$,"SIMULATION_PROTOCOL","http://SIMULATION/","appletDocumentBase",null,"viewer",null,"jsDocumentBase","");c$.urlPrefixes=c$.prototype.urlPrefixes=w(-1,["http:","https:","ftp:","http://SIMULATION/","file:"]);D(c$,"URL_LOCAL",
4);c$.htCorrelationCache=c$.prototype.htCorrelationCache=new java.util.Hashtable;D(c$,"nciResolver","https://cactus.nci.nih.gov/chemical/structure/%FILE/file?format=sdf&get3d=True","nmrdbServerH1","http://www.nmrdb.org/tools/jmol/predict.php?POST?molfile=","nmrdbServerC13","http://www.nmrdb.org/service/jsmol13c?POST?molfile=","stringCount",0)});q("JSV.common");r(["javajs.api.BytePoster","$.PlatformViewer","javajs.awt.Dimension","JSV.common.Spectrum"],"JSV.common.JSViewer","java.io.File java.lang.Boolean $.Character $.Double $.Float $.Thread java.net.URL java.util.Arrays $.Hashtable JU.CU $.Lst $.OC $.PT $.SB JSV.common.Annotation $.ExportType $.JSVFileManager $.PanelData $.PanelNode $.Parameters $.PeakInfo $.PrintLayout $.RepaintManager $.ScriptToken $.ScriptTokenizer JSV.source.JDXReader $.JDXSource JSV.tree.SimpleTree JU.Logger".split(" "),
function(){c$=p(function(){this.irMode=this.overlayLegendDialog=this.viewDialog=this.dialogManager=this.jsvpPopupMenu=this.fileHelper=this.scriptQueue=this.properties=this.mainPanel=this.selectedPanel=this.repaintManager=this.parameters=this.panelNodes=this.currentSource=this.spectraTree=this.g2d=this.si=null;this.autoShowLegend=this.autoIntegrate=this.interfaceOverlaid=this.loadImaginary=!1;this.obscureTitleFromUser=null;this.allowMenu=this.allowCompoundMenu=!0;this.initialEndIndex=this.initialStartIndex=
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null;this.recentOpenURL="http://";this.recentURL=null;this.recentSimulation="tylenol";j(this,arguments)},JSV.common,"JSViewer",null,[javajs.api.PlatformViewer,javajs.api.BytePoster]);F(c$,function(){this.irMode=JSV.common.Spectrum.IRMode.NO_CONVERT;this.dimScreen=new javajs.awt.Dimension(0,0)});c(c$,"setProperty",function(a,b){null!=this.properties&&this.properties.setProperty(a,b)},"~S,~S");c(c$,"setNode",function(a){a.jsvp!==this.selectedPanel&&this.si.siSetSelectedPanel(a.jsvp);this.si.siSendPanelChange();
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this.apiPlatform.isSingleThreaded();this.panelNodes=new JU.Lst;this.repaintManager=new JSV.common.RepaintManager(this);b||this.setPopupMenu(!0,!0)},"JSV.api.ScriptInterface,~B,~B");c(c$,"setPopupMenu",function(a,b){this.popupAllowMenu=a;this.popupZoomEnabled=b},"~B,~B");c(c$,"showMenu",function(a,b){if(this.popupAllowMenu){if(null==this.jsvpPopupMenu)try{this.jsvpPopupMenu=this.getPlatformInterface("Popup"),this.jsvpPopupMenu.jpiInitialize(this,this.isApplet?"appletMenu":"appMenu"),this.jsvpPopupMenu.setEnabled(this.popupAllowMenu,
this.popupZoomEnabled)}catch(c){if(y(c,Exception)){JU.Logger.error(c+" initializing popup menu");return}throw c;}this.jsvpPopupMenu.jpiShow(a,b)}},"~N,~N");c(c$,"runScriptNow",function(a){System.out.println(this.checkScript(a));this.scriptLevelCount++;null==a&&(a="");a=a.trim();if(a.startsWith("!"))a=a.substring(1).trim();else if(a.startsWith(">"))return JU.Logger.error(a),!0;if(0<=a.indexOf("<PeakData"))return this.syncScript(a),!0;JU.Logger.info("RUNSCRIPT "+a);var b=!0,c=10;a=new JSV.common.ScriptTokenizer(a,
!0);for(var f=null;null!=a&&a.hasMoreTokens()&&0<c&&b;){var g=a.nextToken(),e=new JSV.common.ScriptTokenizer(g,!1),j=JSV.common.ScriptToken.getKey(e);if(null!=j){var k=JSV.common.ScriptToken.getScriptToken(j),e=JSV.common.ScriptToken.getValue(k,e,g);try{switch(k){case JSV.common.ScriptToken.UNKNOWN:JU.Logger.info("Unrecognized parameter: "+j);--c;break;default:if(null==this.selectedPanel)break;this.parameters.set(this.pd(),k,e);this.si.siUpdateBoolean(k,JSV.common.Parameters.isTrue(e));break;case JSV.common.ScriptToken.PEAKCALLBACKFUNCTIONNAME:case JSV.common.ScriptToken.SYNCCALLBACKFUNCTIONNAME:case JSV.common.ScriptToken.COORDCALLBACKFUNCTIONNAME:case JSV.common.ScriptToken.LOADFILECALLBACKFUNCTIONNAME:this.si.siExecSetCallback(k,
e);break;case JSV.common.ScriptToken.DEFAULTLOADSCRIPT:e=JU.PT.rep(e,"''",'"');this.defaultLoadScript=0<e.length?e:null;break;case JSV.common.ScriptToken.DEFAULTNMRNORMALIZATION:this.nmrMaxY=JU.PT.parseFloat(e);break;case JSV.common.ScriptToken.AUTOINTEGRATE:this.autoIntegrate=JSV.common.Parameters.isTrue(e);break;case JSV.common.ScriptToken.CLOSE:this.execClose(e);break;case JSV.common.ScriptToken.DEBUG:JU.Logger.setLogLevel(e.toLowerCase().equals("high")?6:JSV.common.Parameters.isTrue(e)?5:4);break;
case JSV.common.ScriptToken.GETPROPERTY:var l=null==this.selectedPanel?null:this.getPropertyAsJavaObject(e);null!=l&&this.selectedPanel.showMessage(JU.PT.toJSON(null,l),e);break;case JSV.common.ScriptToken.HELP:this.execHelp(e);break;case JSV.common.ScriptToken.HIDDEN:this.si.siExecHidden(JSV.common.Parameters.isTrue(e));break;case JSV.common.ScriptToken.INTEGRATIONRATIOS:this.integrationRatios=e;this.execIntegrate(null);break;case JSV.common.ScriptToken.INTERFACE:this.interfaceOverlaid=this.checkOvelayInterface(e);
break;case JSV.common.ScriptToken.INTEGRALOFFSET:case JSV.common.ScriptToken.INTEGRALRANGE:this.execSetIntegralParameter(k,Double.parseDouble(e));break;case JSV.common.ScriptToken.INVERTY:this.execZoom("invertY");break;case JSV.common.ScriptToken.JMOL:this.si.syncToJmol(e);break;case JSV.common.ScriptToken.JSV:this.syncScript(JU.PT.trimQuotes(e));break;case JSV.common.ScriptToken.LOAD:if(0==e.length){null!=this.defaultLoadScript&&this.runScriptNow(this.defaultLoadScript);break}this.execLoad(e,(null==
this.defaultLoadScript?"":this.defaultLoadScript+";")+a.getRemainingScript());f=null==this.selectedPanel?null:this.si.siLoaded(e);a=null;break;case JSV.common.ScriptToken.LOADIMAGINARY:this.loadImaginary=JSV.common.Parameters.isTrue(e);break;case JSV.common.ScriptToken.PEAK:this.execPeak(e);break;case JSV.common.ScriptToken.PEAKLIST:this.execPeakList(e);break;case JSV.common.ScriptToken.SCALEBY:this.scaleSelectedBy(this.panelNodes,e);break;case JSV.common.ScriptToken.SCRIPT:if(e.equals("")||e.toLowerCase().startsWith("inline"))this.execScriptInline(e);
else{var n=JSV.common.JSVFileManager.getFileAsString(e);null!=n&&100>this.scriptLevelCount&&this.runScriptNow(n)}break;case JSV.common.ScriptToken.SELECT:this.execSelect(e);break;case JSV.common.ScriptToken.SPECTRUM:case JSV.common.ScriptToken.SPECTRUMNUMBER:this.setSpectrum(e)||(b=!1);break;case JSV.common.ScriptToken.STACKOFFSETY:this.execOverlayOffsetY(JU.PT.parseInt(""+JU.PT.parseFloat(e)));break;case JSV.common.ScriptToken.TEST:this.si.siExecTest(e);break;case JSV.common.ScriptToken.OVERLAY:case JSV.common.ScriptToken.VIEW:this.execView(e,
!0);break;case JSV.common.ScriptToken.HIGHLIGHT:b=this.highlight(g);break;case JSV.common.ScriptToken.FINDX:case JSV.common.ScriptToken.GETSOLUTIONCOLOR:case JSV.common.ScriptToken.INTEGRATION:case JSV.common.ScriptToken.INTEGRATE:case JSV.common.ScriptToken.IRMODE:case JSV.common.ScriptToken.LABEL:case JSV.common.ScriptToken.LINK:case JSV.common.ScriptToken.OVERLAYSTACKED:case JSV.common.ScriptToken.PRINT:case JSV.common.ScriptToken.SETPEAK:case JSV.common.ScriptToken.SETX:case JSV.common.ScriptToken.SHIFTX:case JSV.common.ScriptToken.SHOWERRORS:case JSV.common.ScriptToken.SHOWMEASUREMENTS:case JSV.common.ScriptToken.SHOWMENU:case JSV.common.ScriptToken.SHOWKEY:case JSV.common.ScriptToken.SHOWPEAKLIST:case JSV.common.ScriptToken.SHOWINTEGRATION:case JSV.common.ScriptToken.SHOWPROPERTIES:case JSV.common.ScriptToken.SHOWSOURCE:case JSV.common.ScriptToken.YSCALE:case JSV.common.ScriptToken.WRITE:case JSV.common.ScriptToken.ZOOM:if(this.isClosed()){b=
!1;break}switch(k){case JSV.common.ScriptToken.FINDX:this.pd().findX(null,Double.parseDouble(e));break;case JSV.common.ScriptToken.GETSOLUTIONCOLOR:this.show("solutioncolor"+e.toLowerCase());break;case JSV.common.ScriptToken.INTEGRATION:case JSV.common.ScriptToken.INTEGRATE:this.execIntegrate(e);break;case JSV.common.ScriptToken.IRMODE:this.execIRMode(e);break;case JSV.common.ScriptToken.LABEL:this.pd().addAnnotation(JSV.common.ScriptToken.getTokens(e));break;case JSV.common.ScriptToken.LINK:this.pd().linkSpectra(JSV.common.PanelData.LinkMode.getMode(e));
break;case JSV.common.ScriptToken.OVERLAYSTACKED:this.pd().splitStack(!JSV.common.Parameters.isTrue(e));break;case JSV.common.ScriptToken.PRINT:f=this.execWrite(null);break;case JSV.common.ScriptToken.SETPEAK:case JSV.common.ScriptToken.SETX:case JSV.common.ScriptToken.SHIFTX:this.execShiftSpectrum(k,g);break;case JSV.common.ScriptToken.SHOWERRORS:this.show("errors");break;case JSV.common.ScriptToken.SHOWINTEGRATION:this.pd().showAnnotation(JSV.common.Annotation.AType.Integration,JSV.common.Parameters.getTFToggle(e));
break;case JSV.common.ScriptToken.SHOWKEY:this.setOverlayLegendVisibility(JSV.common.Parameters.getTFToggle(e),!0);break;case JSV.common.ScriptToken.SHOWMEASUREMENTS:this.pd().showAnnotation(JSV.common.Annotation.AType.Measurements,JSV.common.Parameters.getTFToggle(e));break;case JSV.common.ScriptToken.SHOWMENU:this.showMenu(-2147483648,0);break;case JSV.common.ScriptToken.SHOWPEAKLIST:this.pd().showAnnotation(JSV.common.Annotation.AType.PeakList,JSV.common.Parameters.getTFToggle(e));break;case JSV.common.ScriptToken.SHOWPROPERTIES:this.show("properties");
break;case JSV.common.ScriptToken.SHOWSOURCE:this.show("source");break;case JSV.common.ScriptToken.YSCALE:this.setYScale(e);break;case JSV.common.ScriptToken.WINDOW:this.si.siNewWindow(JSV.common.Parameters.isTrue(e),!1);break;case JSV.common.ScriptToken.WRITE:f=this.execWrite(e);break;case JSV.common.ScriptToken.ZOOM:b=this.execZoom(e)}}}catch(m){if(y(m,Exception))f=m.toString(),JU.Logger.error(m.toString()),b=!1,--c;else throw m;}}}this.scriptLevelCount--;this.si.siExecScriptComplete(f,!0);return b},
"~S");c(c$,"execShiftSpectrum",function(a,b){var c=JSV.common.ScriptToken.getTokens(b),f=NaN,g=NaN;switch(c.size()){case 2:g=c.get(1);g.equals("")&&(g="?");g=g.equalsIgnoreCase("NONE")?1.7976931348623157E308:g.equalsIgnoreCase("?")?NaN:Double.parseDouble(g);break;case 3:f=Double.parseDouble(c.get(1));g=Double.parseDouble(c.get(2));break;default:Double.parseDouble("")}c=0;switch(a){case JSV.common.ScriptToken.SETPEAK:c=1;break;case JSV.common.ScriptToken.SETX:c=2;break;case JSV.common.ScriptToken.SHIFTX:c=
3;Double.isNaN(g)&&Double.parseDouble("");break;default:return}this.pd().shiftSpectrum(c,f,g)},"JSV.common.ScriptToken,~S");c(c$,"execClose",function(a){var b=!a.startsWith("!");b||(a=a.substring(1));this.close(JU.PT.trimQuotes(a));(!b||0==this.panelNodes.size())&&this.si.siValidateAndRepaint(!0)},"~S");c(c$,"checkOvelayInterface",function(a){return a.equalsIgnoreCase("single")||a.equalsIgnoreCase("overlay")},"~S");c(c$,"execPeak",function(a){try{var b=JSV.common.ScriptToken.getTokens(JU.PT.rep(a,
"#","INDEX="));a=' type="'+b.get(0).toUpperCase()+'" _match="'+JU.PT.trimQuotes(b.get(1).toUpperCase())+'"';2<b.size()&&b.get(2).equalsIgnoreCase("all")&&(a+=' title="ALL"');this.processPeakPickEvent(new JSV.common.PeakInfo(a),!1)}catch(c){if(!y(c,Exception))throw c;}},"~S");c(c$,"execPeakList",function(a){var b=this.parameters,c=JSV.common.Parameters.getTFToggle(a);if(0>a.indexOf("="))this.isClosed()||this.pd().getPeakListing(null,c);else{var c=JSV.common.ScriptToken.getTokens(a),f=b.peakListThreshold,
g=b.peakListInterpolation;try{for(var e=c.size();0<=--e;){var j=c.get(e),k=j.indexOf("=");if(!(0>=k)){var l=j.substring(0,k);a=j.substring(k+1);l.startsWith("thr")?f=Double.$valueOf(a).doubleValue():l.startsWith("int")&&(g=a.equalsIgnoreCase("none")?"NONE":"parabolic")}}b.peakListThreshold=f;b.peakListInterpolation=g;this.isClosed()||this.pd().getPeakListing(b,Boolean.TRUE)}catch(m){if(!y(m,Exception))throw m;}}},"~S");c(c$,"highlight",function(a){var b=JSV.common.ScriptToken.getTokens(a),c=b.size();
switch(c){case 3:case 5:case 6:case 7:break;case 2:case 4:if(b.get(c-1).equalsIgnoreCase("OFF"))break;default:return!1}if(!this.isClosed()){a=JU.PT.parseFloat(1<c?b.get(1):"");var f=JU.PT.parseFloat(2<c?b.get(2):""),g=this.getRGB(3<c?b.get(3):"100"),e=this.getRGB(4<c?b.get(4):"100"),j=this.getRGB(5<c?b.get(5):"100"),b=this.getRGB(6<c?b.get(6):"100");Float.isNaN(a)||Float.isNaN(f)?this.pd().removeAllHighlights():(this.pd().removeHighlight(a,f),0>b&&(b=150),0<=g&&(0<=e&&0<=j)&&this.pd().addHighlight(null,
a,f,null,g,e,j,b));this.repaint(!0)}return!0},"~S");c(c$,"getRGB",function(a){a=JU.PT.parseFloat(a);return G(Float.isNaN(a)?-1:1<a?a:255*a)},"~S");c(c$,"execZoom",function(a){var b=0,c=0,f=0,g=0;a=JU.PT.rep(a," - "," ").$replace(","," ");a=JSV.common.ScriptToken.getTokens(a);switch(a.size()){default:return!1;case 0:return b=this.pd().getCurrentGraphSet().getCurrentView(),a=Math.round(100*b.minXOnScale)/100+","+Math.round(100*b.maxXOnScale)/100,a=this.selectedPanel.getInput("Enter zoom range x1 x2",
"Zoom",a),null==a||this.execZoom(a);case 1:return a=a.get(0),a.equalsIgnoreCase("next")?this.pd().nextView():a.toLowerCase().startsWith("prev")?this.pd().previousView():a.equalsIgnoreCase("out")?this.pd().resetView():a.equalsIgnoreCase("clear")?this.pd().clearAllView():a.equalsIgnoreCase("invertY")&&this.pd().getCurrentGraphSet().invertYAxis(),!0;case 2:b=Double.parseDouble(a.get(0));c=Double.parseDouble(a.get(1));break;case 3:var e=a.get(0);e.equalsIgnoreCase("X")?(b=Double.parseDouble(a.get(1)),
c=Double.parseDouble(a.get(2))):e.equalsIgnoreCase("Y")&&(f=Double.parseDouble(a.get(1)),g=Double.parseDouble(a.get(2)));break;case 4:b=Double.parseDouble(a.get(0)),f=Double.parseDouble(a.get(1)),c=Double.parseDouble(a.get(2)),g=Double.parseDouble(a.get(3))}this.pd().setZoom(b,f,c,g);return!0},"~S");c(c$,"scaleSelectedBy",function(a,b){try{for(var c=Double.parseDouble(b),f=a.size();0<=--f;)a.get(f).pd().scaleSelectedBy(c)}catch(g){if(!y(g,Exception))throw g;}},"JU.Lst,~S");c(c$,"pd",function(){return null==
this.selectedPanel?null:this.selectedPanel.getPanelData()});c(c$,"isClosed",function(){return null==this.pd()});c(c$,"execSelect",function(a){if(a.startsWith("ID ")){if(!this.isClosed())try{this.pd().selectSpectrum(null,"ID",JU.PT.trimQuotes(a.substring(3)),!0)}catch(b){if(!y(b,Exception))throw b;}}else{for(var c=this.panelNodes,f=c.size();0<=--f;)c.get(f).pd().selectFromEntireSet(-2147483648);c=new JU.Lst;this.fillSpecList(a,c,!1)}},"~S");c(c$,"execView",function(a,b){if(a.equals(""))this.checkOverlay();
else{var c=new JU.Lst,f=this.fillSpecList(a,c,!0);0<c.size()&&this.si.siOpenDataOrFile(null,f,c,f,-1,-1,!1,null,null);b||this.si.siValidateAndRepaint(!1)}},"~S,~B");c(c$,"execIRMode",function(a){for(var b=JSV.common.Spectrum.IRMode.getMode(a),c=this.pd().getSpectrum().dataType,f=this.panelNodes.size();0<=--f;)this.panelNodes.get(f).pd().setIRMode(b,c);this.setIRmode(a)},"~S");c(c$,"execIntegrate",function(a){this.isClosed()||(this.pd().checkIntegral(this.parameters,a),null!=this.integrationRatios&&
this.pd().setIntegrationRatios(this.integrationRatios),this.integrationRatios=null,this.repaint(!0))},"~S");c(c$,"repaint",function(a){this.selectedPanel.doRepaint(a)},"~B");c(c$,"execSetIntegralParameter",function(a,b){var c=this.parameters;switch(a){case JSV.common.ScriptToken.INTEGRALRANGE:c.integralRange=b;break;case JSV.common.ScriptToken.INTEGRALOFFSET:c.integralOffset=b}this.isClosed()||this.pd().checkIntegral(this.parameters,"update")},"JSV.common.ScriptToken,~N");c(c$,"setYScale",function(a){var b=
JSV.common.ScriptToken.getTokens(a),c=0,f=!1;1<b.size()&&b.get(0).equalsIgnoreCase("ALL")&&(f=!0,c++);a=Double.parseDouble(b.get(c++));b=Double.parseDouble(b.get(c));if(f){f=this.pd().getSpectrum();for(c=this.panelNodes.size();0<=--c;){var g=this.panelNodes.get(c);g.source===this.currentSource&&JSV.common.Spectrum.areXScalesCompatible(f,g.getSpectrum(),!1,!1)&&g.pd().setZoom(0,a,0,b)}}else this.pd().setZoom(0,a,0,b)},"~S");c(c$,"setOverlayLegendVisibility",function(a,b){b&&(this.overlayLegendVisible=
null==a?!this.overlayLegendVisible:a===Boolean.TRUE);for(var c=JSV.common.PanelNode.findNode(this.selectedPanel,this.panelNodes),f=this.panelNodes.size();0<=--f;)this.showOverlayLegend(this.panelNodes.get(f),this.panelNodes.get(f)===c&&this.overlayLegendVisible)},"Boolean,~B");c(c$,"showOverlayLegend",function(a,b){var c=a.legend;null==c&&b&&(c=a.setLegend(1<a.pd().getNumberOfSpectraInCurrentSet()&&1==a.pd().getNumberOfGraphSets()?this.getDialog(JSV.common.Annotation.AType.OverlayLegend,null):null));
null!=c&&c.setVisible(b)},"JSV.common.PanelNode,~B");c(c$,"syncScript",function(a){a.equals("TEST")&&(a=JSV.common.JSViewer.testScript);JU.Logger.info("JSViewer.syncScript Jmol>JSV "+a);if(0>a.indexOf("<PeakData"))a.startsWith("JSVSTR:")?this.si.syncToJmol(a):(this.runScriptNow(a),0<=a.indexOf("#SYNC_PEAKS")&&this.syncPeaksAfterSyncScript());else{JU.Logger.info(">>toJSV>> "+a);var b=JU.PT.getQuotedAttribute(a,"sourceID"),c,f,g,e;if(null==b){f=JU.PT.getQuotedAttribute(a,"file");g=JU.PT.getQuotedAttribute(a,
"index");if(null==f||null==g)return;f=JU.PT.rep(f,"#molfile","");c=JU.PT.getQuotedAttribute(a,"model");b=JU.PT.getQuotedAttribute(a,"src");e=null!=b&&b.startsWith("Jmol")?null:this.returnFromJmolModel;if(null!=c&&null!=e&&!c.equals(e)){JU.Logger.info("JSV ignoring model "+c+"; should be "+e);return}this.returnFromJmolModel=null;if(0==this.panelNodes.size()||!this.checkFileAlreadyLoaded(f))JU.Logger.info("file "+f+" not found -- JSViewer closing all and reopening"),this.si.siSyncLoad(f);a=JU.PT.getQuotedAttribute(a,
"type");e=null}else f=null,g=c=b,e=","+JU.PT.getQuotedAttribute(a,"atom")+",",a="ID";g=this.selectPanelByPeak(f,g,e);e=this.pd();e.selectSpectrum(f,a,c,!0);this.si.siSendPanelChange();e.addPeakHighlight(g);this.repaint(!0);(null==b||null!=g&&null!=g.getAtoms())&&this.si.syncToJmol(this.jmolSelect(g))}},"~S");c(c$,"syncPeaksAfterSyncScript",function(){var a=this.currentSource;if(null!=a)try{var b="file="+JU.PT.esc(a.getFilePath()),c=a.getSpectra().get(0).getPeakList(),f=new JU.SB;f.append("[");for(var e=
c.size(),a=0;a<e;a++){var h=c.get(a).toString(),h=h+" "+b;f.append(JU.PT.esc(h));0<a&&f.append(",")}f.append("]");this.si.syncToJmol("Peaks: "+f)}catch(j){if(!y(j,Exception))throw j;}});c(c$,"checkFileAlreadyLoaded",function(a){if(this.isClosed())return!1;if(this.pd().hasFileLoaded(a))return!0;for(var b=this.panelNodes.size();0<=--b;)if(this.panelNodes.get(b).pd().hasFileLoaded(a))return this.si.siSetSelectedPanel(this.panelNodes.get(b).jsvp),!0;return!1},"~S");c(c$,"selectPanelByPeak",function(a,
b,c){if(null==this.panelNodes)return null;for(var f=null,e=this.panelNodes.size();0<=--e;)this.panelNodes.get(e).pd().addPeakHighlight(null);f=this.pd().selectPeakByFileIndex(a,b,c);if(null!=f)this.setNode(JSV.common.PanelNode.findNode(this.selectedPanel,this.panelNodes));else for(e=this.panelNodes.size();0<=--e;){var h=this.panelNodes.get(e);if(null!=(f=h.pd().selectPeakByFileIndex(a,b,c))){this.setNode(h);break}}return f},"~S,~S,~S");c(c$,"processPeakPickEvent",function(a){if(v(a,JSV.common.PeakInfo)){var b=
this.pd().findMatchingPeakInfo(a);if(null==b){if(!"ALL".equals(a.getTitle()))return;for(var c=null,f=0;f<this.panelNodes.size();f++)if(null!=(b=this.panelNodes.get(f).pd().findMatchingPeakInfo(a))){c=this.panelNodes.get(f);break}if(null==c)return;this.setNode(c)}a=b}else this.si.siSetSelectedPanel(a.getSource()),a=a.getPeakInfo();this.pd().addPeakHighlight(a);this.syncToJmol(a);a.isClearAll()?this.repaint(!1):this.pd().selectSpectrum(a.getFilePath(),a.getType(),a.getModel(),!0);this.si.siCheckCallbacks(a.getTitle())},
"~O,~B");c(c$,"newStructToJmol",function(a){JU.Logger.info("sending new structure to Jmol:\n"+a);this.si.syncToJmol("struct:"+a)},"~S");c(c$,"syncToJmol",function(a){this.repaint(!0);this.returnFromJmolModel=a.getModel();this.si.syncToJmol(this.jmolSelect(a))},"JSV.common.PeakInfo");c(c$,"sendPanelChange",function(){var a=this.pd(),b=a.getSpectrum(),c=b.getSelectedPeak();null==c&&(c=b.getModelPeakInfoForAutoSelectOnLoad());null==c&&(c=b.getBasePeakInfo());a.addPeakHighlight(c);JU.Logger.info(Thread.currentThread()+
"JSViewer sendFrameChange "+this.selectedPanel);this.syncToJmol(c)});c(c$,"jmolSelect",function(a){var b="IR".equals(a.getType())||"RAMAN".equals(a.getType())?"vibration ON; selectionHalos OFF;":"vibration OFF; selectionhalos "+(null==a.getAtoms()?"OFF":"ON");return"Select: "+a+' script="'+b+' " sourceID="'+this.pd().getSpectrum().sourceID+'"'},"JSV.common.PeakInfo");c(c$,"getPropertyAsJavaObject",function(a){var b=new java.util.Hashtable;if("SOURCEID".equalsIgnoreCase(a))return b.put(a,null==this.pd()?
"":this.pd().getSpectrum().sourceID),b;if(null!=a&&a.startsWith("DATA_"))return b.put(a,""+JSV.common.JSVFileManager.cacheGet(a.substring(5))),b;var c=!1;if(null!=a&&a.toUpperCase().startsWith("ALL ")||"all".equalsIgnoreCase(a))a=a.substring(3).trim(),c=!0;"".equals(a)&&(a=null);if("NAMES".equalsIgnoreCase(a)||"KEYS".equalsIgnoreCase(a))a="";var f=this.pd().getInfo(!0,a);if(!c&&null!=f)return f;null!=f&&b.put("current",f);c=new JU.Lst;for(f=0;f<this.panelNodes.size();f++)null!=this.panelNodes.get(f).jsvp&&
c.addLast(this.panelNodes.get(f).getInfo(a));b.put("items",c);return b},"~S");c(c$,"getCoordinate",function(){if(!this.isClosed()){var a=this.pd().getClickedCoordinate();if(null!=a)return a.getXVal()+" "+a.getYVal()}return""});c(c$,"fillSpecList",function(a,b,c){var f,e=null,h=a.equalsIgnoreCase("NONE");if(h||a.equalsIgnoreCase("all"))a="*";if(0>a.indexOf("*")){f=a.$plit(" ");a=new JU.SB;for(var j=0;j<f.length;j++){var k=f[j].indexOf(".");k!=f[j].lastIndexOf(".")&&(f[j]=f[j].substring(0,k+1)+f[j].substring(k+
1).$replace(".","_"));a.append(f[j]).append(" ")}a=a.toString().trim()}if(a.equals("*"))f=JSV.common.ScriptToken.getTokens(JSV.common.PanelNode.getSpectrumListAsString(this.panelNodes));else if(a.startsWith('"')||a.startsWith("'"))f=JSV.common.ScriptToken.getTokens(a);else if(a=JU.PT.rep(a,"_"," _ "),a=JU.PT.rep(a,"-"," - "),f=JSV.common.ScriptToken.getTokens(a),e=JSV.common.ScriptToken.getTokens(JSV.common.PanelNode.getSpectrumListAsString(this.panelNodes)),0==e.size())return null;var l=this.isClosed()?
"1.":JSV.common.PanelNode.findNode(this.selectedPanel,this.panelNodes).id,l=l.substring(0,l.indexOf(".")+1);a=new JU.SB;for(var m=f.size(),n=null,j=0;j<m;j++){var p=f.get(j),k=NaN,q=-1;j+1<m&&f.get(j+1).equals("*")?(j+=2,k=Double.parseDouble(f.get(j))):j+1<m&&f.get(j+1).equals("_")&&(j+=2,q=Integer.parseInt(f.get(j)));if(p.equals("-")){null==n&&(n=e.get(0));p=j+1==m?e.get(e.size()-1):f.get(++j);p.contains(".")||(p=l+p);for(k=0;k<e.size()&&!e.get(k).equals(n);)k++;for(k++;k<e.size()&&!n.equals(p);){var r=
JSV.common.PanelNode.findNodeById(n=e.get(k++),this.panelNodes);b.addLast(r.pd().getSpectrumAt(0));a.append(",").append(n)}}else if(p.startsWith("'")&&p.endsWith("'")&&(p='"'+JU.PT.trim(p,"'")+'"'),p.startsWith('"'))for(var p=JU.PT.trim(p,'"'),q=this.panelNodes.size(),s=0;s<q;s++){if(r=this.panelNodes.get(s),null!=r.fileName&&r.fileName.startsWith(p)||null!=r.frameTitle&&r.frameTitle.startsWith(p))this.addSpecToList(r.pd(),k,-1,b,c),a.append(",").append(r.id)}else p.contains(".")||(p=l+p),r=JSV.common.PanelNode.findNodeById(p,
this.panelNodes),null!=r&&(n=p,this.addSpecToList(r.pd(),k,q,b,c),a.append(",").append(p),0<q&&a.append(".").appendI(q))}c&&0<b.size()&&(r=JSV.common.PanelNode.findNodeById(a.substring(1),this.panelNodes),null!=r&&(this.setNode(r),b.clear()));return h?"NONE":0<a.length()?a.toString().substring(1):null},"~S,JU.Lst,~B");c(c$,"addSpecToList",function(a,b,c,f,e){e?(a.getSpectrumAt(0).setUserYFactor(Double.isNaN(b)?1:b),a.addToList(c-1,f)):a.selectFromEntireSet(c-1)},"JSV.common.PanelData,~N,~N,JU.Lst,~B");
c(c$,"getSolutionColor",function(a){var b=this.pd().getSpectrum(),c=b.canShowSolutionColor()?JSV.common.JSViewer.getInterface("JSV.common.Visible"):null;return null==c?-1:c.getColour(b,a)},"~B");c(c$,"openDataOrFile",function(a,b,c,f,e,h,j,k){if("NONE".equals(b))return this.close("View*"),0;this.si.writeStatus("");var l=null,m=null,n=null,p=!1;null!=f&&f.startsWith("cache://")&&(a=Jmol.Cache.get(b=f));if(null!=a)try{n=b,m=l=JSV.common.JSVFileManager.getFullPathName(b)}catch(q){if(!y(q,JSV.exception.JSVException))throw q;
}else if(null!=c)p=!0,m=n=l="View"+ ++this.nViews;else if(null!=f)try{this.recentURL=l=(new java.net.URL(JSV.common.JSVFileManager.appletDocumentBase,f,null)).toString(),n=JSV.common.JSVFileManager.getTagName(l)}catch(r){if(y(r,java.net.MalformedURLException))l=this.apiPlatform.newFile(f),n=l.getName(),m=l=l.getFullPath(),this.recentURL=null;else throw r;}b=-1;if(0<=(b=JSV.common.PanelNode.isOpen(this.panelNodes,l))||0<=(b=JSV.common.PanelNode.isOpen(this.panelNodes,f)))return p?(--this.nViews,this.setNode(this.panelNodes.get(b))):
this.si.writeStatus(l+" is already open"),-1;!j&&!p&&this.close("all");this.si.setCursor(3);try{this.si.siSetCurrentSource(p?JSV.source.JDXSource.createView(c):JSV.source.JDXReader.createJDXSource(JSV.common.JSVFileManager.getBufferedReaderForData(a),l,this.obscureTitleFromUser===Boolean.TRUE,this.loadImaginary,e,h,this.nmrMaxY))}catch(s){if(y(s,Exception))return alert(s.toString()),this.si.setCursor(0),this.isApplet&&this.selectedPanel.showMessage(s.toString(),"Error Opening File"),-3;throw s;}this.si.setCursor(0);
System.gc();null==m?(m=this.currentSource.getFilePath(),null!=m&&(n=m.substring(m.lastIndexOf("/")+1))):this.currentSource.setFilePath(m);null==k&&!p&&(k=m);null!=k&&this.currentSource.setID(k);this.si.siSetLoaded(n,m);a=this.currentSource.getJDXSpectrum(0);if(null==a)return-4;c=this.currentSource.getSpectra();JSV.common.Spectrum.process(c,this.irMode);c=this.interfaceOverlaid||a.isAutoOverlayFromJmolClick();p||c&&this.currentSource.isCompoundSource?this.combineSpectra(p?f:null):this.splitSpectra();
this.pd().setTaintedAll();p||this.si.siUpdateRecentMenus(l);return 0},"~O,~S,JU.Lst,~S,~N,~N,~B,~S");c(c$,"close",function(a){var b=0,c=null==a?-2:a.indexOf(">");0<c&&(b=JU.PT.parseInt(a.substring(c+1).trim()),a=a.substring(0,c).trim());"*".equals(a)&&(a="all");var f="all"===a;if(null==a||0==b&&a.equalsIgnoreCase("all"))this.closeSource(null);else{var e=a.equalsIgnoreCase("views"),c=new JU.Lst;a=a.$replace("\\","/");var h=this.panelNodes.size(),b=h-b;if(a.endsWith("*"))for(a=a.substring(0,a.length-
1);0<=--h;)this.panelNodes.get(h).fileName.startsWith(a)&&c.addLast(this.panelNodes.get(h).source);else if(a.equalsIgnoreCase("selected"))for(a=null;0<=--h;)f=this.panelNodes.get(h).source,this.panelNodes.get(h).isSelected&&(null==a||a!==f)&&c.addLast(f),a=f;else if(f||e||a.equalsIgnoreCase("simulations"))for(a=0;0<=--h&&a<b;){if(f||(e?this.panelNodes.get(h).isView:this.panelNodes.get(h).isSimulation))c.addLast(this.panelNodes.get(h).source),a++}else f=0==a.length?this.currentSource:JSV.common.PanelNode.findSourceByNameOrId(a,
this.panelNodes),null!=f&&c.addLast(f);for(h=c.size();0<=--h;)this.closeSource(c.get(h));null==this.selectedPanel&&0<this.panelNodes.size()&&this.si.siSetSelectedPanel(JSV.common.PanelNode.getLastFileFirstNode(this.panelNodes))}},"~S");c(c$,"execLoad",function(a,b){var c=JSV.common.ScriptToken.getTokens(a),f=c.get(0),e=null,h=0;f.equalsIgnoreCase("ID")&&(e=JU.PT.trimQuotes(c.get(1)),f=c.get(2),h=2);var j=f.equalsIgnoreCase("APPEND"),k=f.equalsIgnoreCase("CHECK");(j||k)&&h++;0<h&&(f=c.get(h));null==
b&&(b=this.defaultLoadScript);if(f.equals("?"))this.openFileFromDialog(j,!1,null,b);else if(f.equals("http://?"))this.openFileFromDialog(j,!0,null,null);else if(f.equals("$?")||f.equals("$H1?"))this.openFileFromDialog(j,!0,"H1",null);else if(f.equals("$C13?"))this.openFileFromDialog(j,!0,"C13",null);else{var l=f.equalsIgnoreCase("MOL")||f.equalsIgnoreCase("H1"),m=f.equalsIgnoreCase("C13");if(l||m)f="http://SIMULATION/"+(l?"H1/":"C13/")+"MOL="+JU.PT.trimQuotes(c.get(++h));!k&&!j&&(f.equals('""')&&
null!=this.currentSource&&(f=this.currentSource.getFilePath()),this.close("all"));f=JU.PT.trimQuotes(f);if(k=f.startsWith("$"))!f.startsWith("$H1")&&!f.startsWith("$C13")&&(f="$H1/"+f.substring(1)),f="http://SIMULATION/"+f.substring(1);l=h+1<c.size()?Integer.$valueOf(c.get(++h)).intValue():-1;c=h+1<c.size()?Integer.$valueOf(c.get(++h)).intValue():l;this.si.siOpenDataOrFile(null,null,null,f,l,c,j,b,e);k&&(this.close("views"),this.execView("*",!0))}},"~S,~S");c(c$,"combineSpectra",function(a){for(var b=
this.currentSource,c=b.getSpectra(),f=!1,e=c.size();0<=--e;)if(c.get(e).isSimulation){f=!0;break}c=this.si.siGetNewJSVPanel2(c);c.setTitle(b.getTitle());c.getTitle().equals("")&&(c.getPanelData().setViewTitle(b.getFilePath()),c.setTitle(a));this.si.siSetPropertiesFromPreferences(c,!0);this.spectraTree.createTree(++this.fileCount,b,w(-1,[c])).getPanelNode().isView=!0;b=JSV.common.PanelNode.findNode(this.selectedPanel,this.panelNodes);b.setFrameTitle(a);b.isView=!0;this.autoShowLegend&&1==this.pd().getNumberOfGraphSets()&&
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a=JSV.common.PanelNode.findNode(this.selectedPanel,this.panelNodes);this.si.siSetMenuEnables(a,!0)});c(c$,"selectedTreeNode",function(a){null!=a&&(a.isLeaf()?this.setNode(a.getPanelNode()):System.out.println("not a leaf"),this.si.siSetCurrentSource(a.getPanelNode().source))},"JSV.api.JSVTreeNode");c(c$,"dispose",function(){this.fileHelper=null;null!=this.viewDialog&&this.viewDialog.dispose();this.viewDialog=null;null!=this.overlayLegendDialog&&this.overlayLegendDialog.dispose();this.overlayLegendDialog=
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b,this,b);case JSV.common.Annotation.AType.PeakList:return JSV.common.JSViewer.getInterface("JSV.dialog.PeakListDialog").setParams("Peak List for "+b,this,b);case JSV.common.Annotation.AType.OverlayLegend:return this.overlayLegendDialog=JSV.common.JSViewer.getInterface("JSV.dialog.OverlayLegendDialog").setParams(this.pd().getViewTitle(),this,null);case JSV.common.Annotation.AType.Views:return this.viewDialog=JSV.common.JSViewer.getInterface("JSV.dialog.ViewsDialog").setParams("View/Combine/Close Spectra",
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c(c$,"$export",function(a,b){null==a&&(a="XY");var c=this.pd(),f=c.getNumberOfSpectraInCurrentSet();if(-1>b||b>=f)return"Maximum spectrum index (0-based) is "+(f-1)+".";c=0>b?c.getSpectrum():c.getSpectrumAt(b);try{return JSV.common.JSViewer.getInterface("JSV.export.Exporter").exportTheSpectrum(this,JSV.common.ExportType.getType(a),null,c,0,c.getXYCoords().length-1,null,a.equalsIgnoreCase("PDF"))}catch(e){if(y(e,Exception))return JU.Logger.error(e.toString()),null;throw e;}},"~S,~N");e(c$,"postByteArray",
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Integer.parseInt(b);break;case JSV.common.ScriptToken.INTERFACE:this.checkOvelayInterface(b);break;case JSV.common.ScriptToken.IRMODE:this.setIRmode(b);break;case JSV.common.ScriptToken.MENUON:this.allowMenu=Boolean.parseBoolean(b);break;case JSV.common.ScriptToken.OBSCURE:null==this.obscureTitleFromUser&&(this.obscureTitleFromUser=Boolean.$valueOf(b));break;case JSV.common.ScriptToken.STARTINDEX:this.initialStartIndex=Integer.parseInt(b);break;case JSV.common.ScriptToken.SYNCID:this.fullName=this.appletName+
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"NLEVEL_MAX",100)});q("JSV.common");r(["JSV.common.Annotation","$.Coordinate"],"JSV.common.Measurement",null,function(){c$=p(function(){this.pt2=null;this.value=0;j(this,arguments)},JSV.common,"Measurement",JSV.common.Annotation);F(c$,function(){this.pt2=new JSV.common.Coordinate});c(c$,"setM1",function(a,b,c){this.setA(a,b,c,"",!1,!1,0,6);this.setPt2(this.getXVal(),this.getYVal());return this},"~N,~N,JSV.common.Spectrum");c(c$,"copyM",function(){var a=new JSV.common.Measurement;a.setA(this.getXVal(),
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a;this.text=this.spec.setMeasurementText(this)},"~N");c(c$,"getValue",function(){return this.value});c(c$,"getXVal2",function(){return this.pt2.getXVal()});c(c$,"getYVal2",function(){return this.pt2.getYVal()});e(c$,"addSpecShift",function(a){this.setXVal(this.getXVal()+a);this.pt2.setXVal(this.pt2.getXVal()+a)},"~N");c(c$,"setYVal2",function(a){this.pt2.setYVal(a)},"~N");c(c$,"overlaps",function(a,b){return Math.min(this.getXVal(),this.getXVal2())<Math.max(a,b)&&Math.max(this.getXVal(),this.getXVal2())>
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JU.Lst,JSV.api.AnnotationData);m(c$,function(a,b){z(this,JSV.common.MeasurementData,[]);this.type=a;this.spec=b;this.myParams=(new JSV.common.Parameters).setName("MeasurementData")},"JSV.common.Annotation.AType,JSV.common.Spectrum");c(c$,"getMeasurements",function(){return this});e(c$,"getAType",function(){return this.type});e(c$,"getState",function(){return this.isON});e(c$,"setState",function(a){this.isON=a},"~B");c(c$,"setMeasurements",function(){},"JU.Lst");e(c$,"getParameters",function(){return this.myParams});
c(c$,"getDataHeader",function(){return JSV.common.MeasurementData.HEADER});c(c$,"getMeasurementListArray",function(a){this.units=a;var b=this.getMeasurementListArrayReal(a),c=this.spec.isNMR()?4:2;a=this.spec.isHNMR()&&a.equals("ppm")?4:2;for(var f=Array(this.size()),e=this.size();0<=--e;)f[e]=w(-1,[""+(e+1),JU.DF.formatDecimalDbl(b[e][0],c),JU.DF.formatDecimalDbl(b[e][1],c),JU.DF.formatDecimalDbl(b[e][2],a)]);return f},"~S");c(c$,"getMeasurementListArrayReal",function(a){a=this.spec.isNMR()&&a.equalsIgnoreCase("HZ");
for(var b=JU.AU.newDouble2(this.size()),c=0,f=this.size();0<=--f;){var e=this.get(f).getValue();a&&(e*=this.spec.observedFreq);b[c++]=L(-1,[this.get(f).getXVal(),this.get(f).getXVal2(),e])}return b},"~S");c$.checkParameters=c(c$,"checkParameters",function(a,b){if(0==a.size())return!1;var c=a.getParameters();switch(a.getAType()){case JSV.common.Annotation.AType.PeakList:return b.peakListInterpolation.equals(c.peakListInterpolation)&&b.peakListThreshold==c.peakListThreshold}return!1},"JSV.common.MeasurementData,JSV.common.ColorParameters");
e(c$,"getSpectrum",function(){return this.spec});e(c$,"getData",function(){return this});c(c$,"clear",function(a,b){for(var c=this.size();0<=--c;){var f=this.get(c);(0==f.text.length||f.overlaps(a,b))&&this.removeItemAt(c)}},"~N,~N");c(c$,"find",function(a){for(var b=this.size();0<=--b;)if(this.get(b).overlaps(a,a))return b;return-1},"~N");e(c$,"setSpecShift",function(a){for(var b=this.size();0<=--b;){var c=this.get(b),f=c.getXVal()+a;c.setXVal(f);c.setValue(f);c.text=JU.DF.formatDecimalDbl(f,this.precision)}},
"~N");e(c$,"getGraphSetKey",function(){return this.key});e(c$,"setGraphSetKey",function(a){this.key=a},"~S");e(c$,"isVisible",function(){return!0});c(c$,"getInfo",function(a){a.put("header",this.getDataHeader());a.put("table",this.getMeasurementListArrayReal("ppm"));null!=this.units&&a.put("units",this.units)},"java.util.Map");c$.HEADER=c$.prototype.HEADER=w(-1,["","start","end","value"])});q("JSV.common");r(["java.lang.Enum","javajs.api.EventManager","java.util.Hashtable","JU.Lst"],"JSV.common.PanelData",
"java.lang.Boolean $.Double javajs.awt.Font JU.CU JSV.common.Annotation $.Coordinate $.GraphSet $.JSVFileManager $.JSVersion $.JSViewer $.MeasurementData $.Parameters $.PeakPickEvent $.ScriptToken $.Spectrum $.SubSpecChangeEvent $.ZoomEvent JSV.dialog.JSVDialog J.api.GenericGraphics JU.Logger".split(" "),function(){c$=p(function(){this.graphSets=this.jsvp=this.options=this.currentGraphSet=this.listeners=this.vwr=this.g2d0=this.g2d=null;this.currentSplitPoint=0;this.coordsClicked=this.coordClicked=
this.thisWidget=null;this.isIntegralDrag=this.drawXAxisLeftToRight=this.shiftPressed=this.ctrlPressed=!1;this.xAxisLeftToRight=!0;this.scalingFactor=1;this.integralShiftMode=0;this.left=60;this.right=50;this.coordStr="";this.startupPinTip="Click to set.";this.title=null;this.endIndex=this.startIndex=this.thisHeight=this.thisWidth=this.nSpectra=this.clickCount=0;this.titleFontName=this.displayFontName=this.viewTitle=this.commonFilePath=null;this.isPrinting=!1;this.doReset=!0;this.printingFontName=
null;this.printGraphPosition="default";this.isLinked=this.display1D=this.titleDrawn=!1;this.spectra=this.printJobTitle=null;this.taintedAll=!0;this.testingJavaScript=!1;this.mouseState=this.currentFont=null;this.peakTabsOn=this.titleOn=this.gridOn=!1;this.mouseY=this.mouseX=0;this.linking=!1;this.xPixelClicked=0;this.gMain=this.optionsSaved=this.bgcolor=this.BLACK=this.zoomBoxColor2=this.zoomBoxColor=this.highlightColor=this.unitsColor=this.titleColor=this.scaleColor=this.plotAreaColor=this.peakTabColor=
this.integralPlotColor=this.gridColor=this.coordinatesColor=null;j(this,arguments)},JSV.common,"PanelData",null,javajs.api.EventManager);F(c$,function(){this.listeners=new JU.Lst;this.options=new java.util.Hashtable});m(c$,function(a,b){this.vwr=b;this.jsvp=a;this.g2d=this.g2d0=b.g2d;this.BLACK=this.g2d.getColor1(0);this.highlightColor=this.g2d.getColor4(255,0,0,200);this.zoomBoxColor=this.g2d.getColor4(150,150,100,130);this.zoomBoxColor2=this.g2d.getColor4(150,100,100,130)},"JSV.api.JSVPanel,JSV.common.JSViewer");
c(c$,"addListener",function(a){this.listeners.contains(a)||this.listeners.addLast(a)},"JSV.api.PanelListener");c(c$,"getCurrentGraphSet",function(){return this.currentGraphSet});c(c$,"dispose",function(){this.jsvp=null;for(var a=0;a<this.graphSets.size();a++)this.graphSets.get(a).dispose();this.listeners=this.options=this.thisWidget=this.coordsClicked=this.coordClicked=this.currentGraphSet=this.currentFont=this.graphSets=null});c(c$,"setViewTitle",function(a){this.viewTitle=a},"~S");c(c$,"getViewTitle",
function(){return null==this.viewTitle?this.getTitle():this.viewTitle});c(c$,"getInfo",function(a,b){var c=new java.util.Hashtable,f=null;if(a)return this.currentGraphSet.getInfo(b,this.getCurrentSpectrumIndex());var e=this.options.entrySet();if("".equals(b)){for(var f="type title nSets ",h,e=e.iterator();e.hasNext()&&((h=e.next())||1);)f+=h.getKey().name()+" ";c.put("KEYS",f)}else{for(e=e.iterator();e.hasNext()&&((h=e.next())||1);)JSV.common.Parameters.putInfo(b,c,h.getKey().name(),h.getValue());
JSV.common.Parameters.putInfo(b,c,"type",this.getSpectrumAt(0).getDataType());JSV.common.Parameters.putInfo(b,c,"title",this.title);JSV.common.Parameters.putInfo(b,c,"nSets",Integer.$valueOf(this.graphSets.size()))}f=new JU.Lst;for(h=this.graphSets.size();0<=--h;)f.addLast(this.graphSets.get(h).getInfo(b,-1));c.put("sets",f);return c},"~B,~S");c(c$,"setBooleans",function(a,b){if(null==b)for(var c,f=a.getBooleans().entrySet().iterator();f.hasNext()&&((c=f.next())||1);)this.setBooleans(a,c.getKey());
else this.setBoolean(b,a.getBoolean(b))},"JSV.common.Parameters,JSV.common.ScriptToken");c(c$,"setBoolean",function(a,b){this.setTaintedAll();if(a===JSV.common.ScriptToken.REVERSEPLOT)this.currentGraphSet.setReversePlot(b);else switch(this.options.put(a,Boolean.$valueOf(b)),a){case JSV.common.ScriptToken.DISPLAY1D:case JSV.common.ScriptToken.DISPLAY2D:this.doReset=!0}},"JSV.common.ScriptToken,~B");c(c$,"getBoolean",function(a){if(a===JSV.common.ScriptToken.REVERSEPLOT)return this.currentGraphSet.reversePlot;
if(null==this.options)return!1;a=this.options.get(a);return null!=a&&v(a,Boolean)&&a===Boolean.TRUE},"JSV.common.ScriptToken");c(c$,"setFontName",function(a,b){switch(a){case JSV.common.ScriptToken.DISPLAYFONTNAME:this.displayFontName=b;break;case JSV.common.ScriptToken.TITLEFONTNAME:this.titleFontName=b}null!=b&&this.options.put(a,b)},"JSV.common.ScriptToken,~S");c(c$,"getDisplay1D",function(){return this.display1D});c(c$,"setTaintedAll",function(){this.taintedAll=!0});c(c$,"initOne",function(a){this.spectra=
new JU.Lst;this.spectra.addLast(a);this.initMany(this.spectra,0,0)},"JSV.common.Spectrum");c(c$,"initMany",function(a,b,c){this.startIndex=b;this.endIndex=c;this.nSpectra=a.size();this.spectra=a;this.commonFilePath=a.get(0).getFilePath();for(b=0;b<this.nSpectra;b++)if(!this.commonFilePath.equalsIgnoreCase(a.get(b).getFilePath())){this.commonFilePath=null;break}this.setGraphSets(JSV.common.PanelData.LinkMode.NONE)},"JU.Lst,~N,~N");c(c$,"setGraphSets",function(a){this.graphSets=JSV.common.GraphSet.createGraphSetsAndSetLinkMode(this,
this.jsvp,this.spectra,this.startIndex,this.endIndex,a);this.currentGraphSet=this.graphSets.get(0);this.title=this.getSpectrum().getTitleLabel()},"JSV.common.PanelData.LinkMode");c(c$,"findMatchingPeakInfo",function(a){for(var b=null,c=0;c<this.graphSets.size()&&null==(b=this.graphSets.get(c).findMatchingPeakInfo(a));c++);return b},"JSV.common.PeakInfo");c(c$,"integrateAll",function(a){for(var b=this.graphSets.size();0<=--b;)this.graphSets.get(b).integrate(-1,a)},"JSV.common.ColorParameters");c(c$,
"getNumberOfGraphSets",function(){return this.graphSets.size()});c(c$,"getTitle",function(){return this.title});c(c$,"refresh",function(){this.doReset=!0});c(c$,"addAnnotation",function(a){a=this.currentGraphSet.addAnnotation(a,this.getTitle());null!=a&&(this.title=a)},"JU.Lst");c(c$,"addPeakHighlight",function(a){for(var b=0;b<this.graphSets.size();b++)this.graphSets.get(b).addPeakHighlight(a)},"JSV.common.PeakInfo");c(c$,"selectPeakByFileIndex",function(a,b,c){var f=this.currentGraphSet.selectPeakByFileIndex(a,
b,c);if(null==f)for(var e=this.graphSets.size();0<=--e&&!(this.graphSets.get(e)!==this.currentGraphSet&&null!=(f=this.graphSets.get(e).selectPeakByFileIndex(a,b,c))););return f},"~S,~S,~S");c(c$,"setPlotColors",function(a){for(var b=this.graphSets.size();0<=--b;)this.graphSets.get(b).setPlotColors(a)},"~A");c(c$,"selectSpectrum",function(a,b,c,f){f&&this.currentGraphSet.selectSpectrum(a,b,c);if("ID".equals(b))this.jumpToSpectrumIndex(this.getCurrentSpectrumIndex(),!0);else for(f=0;f<this.graphSets.size();f++)this.graphSets.get(f)!==
this.currentGraphSet&&this.graphSets.get(f).selectSpectrum(a,b,c)},"~S,~S,~S,~B");c(c$,"hasFileLoaded",function(a){for(var b=this.graphSets.size();0<=--b;)if(this.graphSets.get(b).hasFileLoaded(a))return!0;return!1},"~S");c(c$,"clearAllView",function(){for(var a=this.graphSets.size();0<=--a;)this.graphSets.get(a).resetViewCompletely()});c(c$,"drawGraph",function(a,b,c,f,e,h){var j;this.gMain=a;this.display1D=!this.isLinked&&this.getBoolean(JSV.common.ScriptToken.DISPLAY1D);var k=40,l=50,m=this.isPrinting||
this.doReset||this.thisWidth!=f||this.thisHeight!=e;m&&this.setTaintedAll();this.taintedAll&&this.g2d.fillBackground(c,this.bgcolor);b!==a&&(this.g2d.fillBackground(b,null),a!==c&&this.g2d.fillBackground(a,null),this.g2d.setStrokeBold(a,!1));this.isPrinting?(k*=3,l*=3,this.scalingFactor=10,j=!1):(this.scalingFactor=1,j=this.getBoolean(JSV.common.ScriptToken.COORDINATESON),this.titleOn=this.getBoolean(JSV.common.ScriptToken.TITLEON),this.gridOn=this.getBoolean(JSV.common.ScriptToken.GRIDON),this.peakTabsOn=
this.getBoolean(JSV.common.ScriptToken.PEAKTABSON));this.titleDrawn=this.doReset=!1;this.thisWidth=f;this.thisHeight=e;for(var n=this.graphSets.size();0<=--n;)this.graphSets.get(n).drawGraphSet(a,b,c,f,e,this.left,this.right,k,l,m,this.taintedAll);this.titleOn&&(!this.titleDrawn&&this.taintedAll)&&this.drawTitle(a,e*this.scalingFactor,f*this.scalingFactor,this.getDrawTitle(this.isPrinting));j&&null!=this.coordStr&&this.drawCoordinates(b,k,this.thisWidth-this.right,k-20);h&&this.taintedAll&&(c=null!=
this.commonFilePath?this.commonFilePath:1==this.graphSets.size()&&null!=this.currentGraphSet.getTitle(!0)?this.getSpectrum().getFilePath():null,null!=c&&this.printFilePath(a,this.left,e,c));this.isPrinting&&this.printVersion(a,e);!this.testingJavaScript&&(this.isPrinting||a===b)?this.setTaintedAll():this.taintedAll=!1},"~O,~O,~O,~N,~N,~B");c(c$,"drawCoordinates",function(a,b,c,f){this.g2d.setGraphicsColor(a,this.coordinatesColor);b=this.setFont(a,this.jsvp.getWidth(),1,14,!0);this.g2d.drawString(a,
this.coordStr,c-b.stringWidth(this.coordStr),f)},"~O,~N,~N,~N");c(c$,"setFont",function(a,b,c,f,e){return this.g2d.setFont(a,this.getFont(a,b,c,f,e))},"~O,~N,~N,~N,~B");c(c$,"printFilePath",function(a,b,c,f){b*=this.scalingFactor;c*=this.scalingFactor;0<f.indexOf("?")&&(f=f.substring(f.indexOf("?")+1));f=f.substring(f.lastIndexOf("/")+1);f=f.substring(f.lastIndexOf("\\")+1);this.g2d.setGraphicsColor(a,this.BLACK);var e=this.setFont(a,1E3,0,9,!0);b!=this.left*this.scalingFactor&&(b-=e.stringWidth(f));
this.g2d.drawString(a,f,b,c-e.getHeight())},"~O,~N,~N,~S");c(c$,"printVersion",function(a,b){this.g2d.setGraphicsColor(a,this.BLACK);var c=this.setFont(a,100,0,12,!0),f=this.jsvp.getApiPlatform().getDateFormat(null)+" JSpecView "+JSV.common.JSVersion.VERSION_SHORT,e=c.stringWidth(f);this.g2d.drawString(a,f,(this.thisWidth-this.right)*this.scalingFactor-e,b*this.scalingFactor-3*c.getHeight())},"~O,~N");c(c$,"drawTitle",function(a,b,c,f){f=f.$replace("\n"," ");var e=this.getFont(a,c,this.isPrinting||
this.getBoolean(JSV.common.ScriptToken.TITLEBOLDON)?1:0,14,!0),h=e.stringWidth(f);h>c&&(e=x(14*c/h),10>e&&(e=10),e=this.getFont(a,c,this.isPrinting||this.getBoolean(JSV.common.ScriptToken.TITLEBOLDON)?1:0,e,!0));this.g2d.setGraphicsColor(a,this.titleColor);this.setCurrentFont(this.g2d.setFont(a,e));this.g2d.drawString(a,f,this.isPrinting?this.left*this.scalingFactor:5,b-x(e.getHeight()*(this.isPrinting?2:0.5)))},"~O,~N,~N,~S");c(c$,"setCurrentFont",function(a){this.currentFont=a},"javajs.awt.Font");
c(c$,"getFontHeight",function(){return this.currentFont.getAscent()});c(c$,"getStringWidth",function(a){return this.currentFont.stringWidth(a)},"~S");c(c$,"selectFromEntireSet",function(a){for(var b=0,c=0;b<this.graphSets.size();b++)if(-2147483648==a)this.graphSets.get(b).setSelected(-1);else for(var f=this.graphSets.get(b).spectra,e=0;e<f.size();e++,c++)(0>a||a==c)&&this.graphSets.get(b).setSelected(e)},"~N");c(c$,"addToList",function(a,b){for(var c=0;c<this.spectra.size();c++)(0>a||c==a)&&b.addLast(this.spectra.get(c))},
"~N,JU.Lst");c(c$,"scaleSelectedBy",function(a){for(var b=this.graphSets.size();0<=--b;)this.graphSets.get(b).scaleSelectedBy(a)},"~N");c(c$,"setCurrentGraphSet",function(a,b){var c=1<a.nSplit?a.getSplitPoint(b):a.getCurrentSpectrumIndex(),f=this.currentGraphSet!==a,e=f||this.currentSplitPoint!=c;this.currentGraphSet=a;this.currentSplitPoint=c;(f||1<a.nSplit&&e)&&this.setSpectrum(c,!0);if(!f){f=a.checkSpectrumClickedEvent(this.mouseX,this.mouseY,this.clickCount);if(!f)return!1;this.currentSplitPoint=
c=a.getCurrentSpectrumIndex();this.setSpectrum(c,!0)}this.jumpToSpectrumIndex(c,f||1<a.nSplit&&e);return f},"JSV.common.GraphSet,~N");c(c$,"jumpToSpectrum",function(a){a=this.currentGraphSet.getSpectrumIndex(a);this.jumpToSpectrumIndex(a,!0)},"JSV.common.Spectrum");c(c$,"jumpToSpectrumIndex",function(a,b){if(!(0>a||a>=this.currentGraphSet.nSpectra)){this.currentSplitPoint=a;b&&this.setSpectrum(this.currentSplitPoint,1<this.currentGraphSet.nSplit);var c=this.getSpectrum();this.notifySubSpectrumChange(c.getSubIndex(),
c)}},"~N,~B");c(c$,"splitStack",function(a){this.currentGraphSet.splitStack(a)},"~B");c(c$,"getNumberOfSpectraInCurrentSet",function(){return this.currentGraphSet.nSpectra});c(c$,"getSourceID",function(){var a=this.getSpectrum().sourceID;return null==a?this.getSpectrumAt(0).sourceID:a});c(c$,"getStartingPointIndex",function(a){return this.currentGraphSet.viewData.getStartingPointIndex(a)},"~N");c(c$,"getEndingPointIndex",function(a){return this.currentGraphSet.viewData.getEndingPointIndex(a)},"~N");
c(c$,"haveSelectedSpectrum",function(){return this.currentGraphSet.haveSelectedSpectrum()});c(c$,"getShowAnnotation",function(a){return this.currentGraphSet.getShowAnnotation(a,-1)},"JSV.common.Annotation.AType");c(c$,"showAnnotation",function(a,b){this.currentGraphSet.setShowAnnotation(a,b)},"JSV.common.Annotation.AType,Boolean");c(c$,"setYStackOffsetPercent",function(a){this.currentGraphSet.yStackOffsetPercent=a},"~N");c(c$,"setSpectrum",function(a,b){this.currentGraphSet.setSpectrum(a,b)},"~N,~B");
c(c$,"getSpectrum",function(){return this.currentGraphSet.getSpectrum()});c(c$,"setSpecForIRMode",function(a){this.setTaintedAll();var b=this.currentGraphSet.getSpectrum();this.currentGraphSet.setSpectrumJDX(a);for(var c=0;c<this.spectra.size();c++)this.spectra.get(c)===b&&this.spectra.set(c,a)},"JSV.common.Spectrum");c(c$,"isShowAllStacked",function(){return this.currentGraphSet.showAllStacked});c(c$,"getCurrentSpectrumIndex",function(){return this.currentGraphSet.getCurrentSpectrumIndex()});c(c$,
"getSpectrumAt",function(a){return null==this.currentGraphSet?null:this.currentGraphSet.getSpectrumAt(a)},"~N");c(c$,"addHighlight",function(a,b,c,f,e,h,j,k){(null==a?this.currentGraphSet:a).addHighlight(b,c,f,this.g2d.getColor4(e,h,j,k))},"JSV.common.GraphSet,~N,~N,JSV.common.Spectrum,~N,~N,~N,~N");c(c$,"removeHighlight",function(a,b){this.currentGraphSet.removeHighlight(a,b)},"~N,~N");c(c$,"removeAllHighlights",function(){this.currentGraphSet.removeAllHighlights()});c(c$,"setZoom",function(a,b,
c,f){this.currentGraphSet.setZoom(a,b,c,f);this.doReset=!0;this.setTaintedAll();this.notifyListeners(new JSV.common.ZoomEvent)},"~N,~N,~N,~N");c(c$,"resetView",function(){this.currentGraphSet.resetView()});c(c$,"previousView",function(){this.currentGraphSet.previousView()});c(c$,"nextView",function(){this.currentGraphSet.nextView()});c(c$,"getSelectedIntegral",function(){return this.currentGraphSet.getSelectedIntegral()});c(c$,"advanceSubSpectrum",function(a){this.currentGraphSet.advanceSubSpectrum(a)},
"~N");c(c$,"setSelectedIntegral",function(a){this.currentGraphSet.setSelectedIntegral(a)},"~N");c(c$,"scaleYBy",function(a){this.currentGraphSet.scaleYBy(a)},"~N");c(c$,"toPeak",function(a){this.currentGraphSet.toPeak(a)},"~N");c(c$,"getClickedCoordinate",function(){return this.coordClicked});c(c$,"getPickedCoordinates",function(a,b){return JSV.common.Coordinate.getPickedCoordinates(this.coordsClicked,this.coordClicked,a,b)},"JSV.common.Coordinate,JSV.common.Coordinate");c(c$,"shiftSpectrum",function(a,
b,c){return this.currentGraphSet.shiftSpectrum(a,b,c)},"~N,~N,~N");c(c$,"findX",function(a,b){this.currentGraphSet.setXPointer(a,b)},"JSV.common.Spectrum,~N");c(c$,"setXPointers",function(a,b,c,f){this.currentGraphSet.setXPointer(a,b);this.currentGraphSet.setXPointer2(c,f)},"JSV.common.Spectrum,~N,JSV.common.Spectrum,~N");c(c$,"isCurrentGraphSet",function(a){return a===this.currentGraphSet},"JSV.common.GraphSet");c(c$,"repaint",function(){this.jsvp.doRepaint(!1)});c(c$,"setToolTipText",function(a){this.jsvp.setToolTipText(a)},
"~S");c(c$,"setHighlightColor",function(a){this.setColor(JSV.common.ScriptToken.HIGHLIGHTCOLOR,a)},"javajs.api.GenericColor");c(c$,"getInput",function(a,b,c){return this.jsvp.getInput(a,b,c)},"~S,~S,~S");c(c$,"getFont",function(a,b,c,f,e){f*=this.scalingFactor;e?400>b&&(f=b*f/400):250>b&&(f=b*f/250);b=this.jsvp.getFontFaceID(this.isPrinting?this.printingFontName:this.displayFontName);return this.currentFont=javajs.awt.Font.createFont3D(b,c,f,f,this.jsvp.getApiPlatform(),a)},"~O,~N,~N,~N,~B");c(c$,
"notifySubSpectrumChange",function(a,b){this.notifyListeners(new JSV.common.SubSpecChangeEvent(a,null==b?null:b.getTitleLabel()))},"~N,JSV.common.Spectrum");c(c$,"notifyPeakPickedListeners",function(a){null==a&&(a=new JSV.common.PeakPickEvent(this.jsvp,this.coordClicked,this.getSpectrum().getAssociatedPeakInfo(this.xPixelClicked,this.coordClicked)));this.notifyListeners(a)},"JSV.common.PeakPickEvent");c(c$,"notifyListeners",function(a){for(var b=0;b<this.listeners.size();b++)null!=this.listeners.get(b)&&
this.listeners.get(b).panelEvent(a)},"~O");c(c$,"escapeKeyPressed",function(a){this.currentGraphSet.escapeKeyPressed(a)},"~B");c(c$,"hasFocus",function(){return this.jsvp.hasFocus()});c(c$,"isMouseUp",function(){return this.mouseState===JSV.common.PanelData.Mouse.UP});c(c$,"doMouseMoved",function(a,b){this.mouseX=a;this.mouseY=b;this.mouseState=JSV.common.PanelData.Mouse.UP;this.clickCount=0;var c=JSV.common.GraphSet.findGraphSet(this.graphSets,a,b);null!=c&&c.mouseMovedEvent(a,b)},"~N,~N");c(c$,
"doMousePressed",function(a,b){this.mouseState=JSV.common.PanelData.Mouse.DOWN;var c=JSV.common.GraphSet.findGraphSet(this.graphSets,a,b);null!=c&&(this.setCurrentGraphSet(c,b),this.clickCount=++this.clickCount%3,this.currentGraphSet.mousePressedEvent(a,b,this.clickCount))},"~N,~N");c(c$,"doMouseDragged",function(a,b){this.isIntegralDrag=(new Boolean(this.isIntegralDrag|this.ctrlPressed)).valueOf();this.mouseState=JSV.common.PanelData.Mouse.DOWN;JSV.common.GraphSet.findGraphSet(this.graphSets,a,b)===
this.currentGraphSet&&(this.currentGraphSet.checkWidgetEvent(a,b,!1)&&this.setTaintedAll(),this.currentGraphSet.mouseMovedEvent(a,b))},"~N,~N");c(c$,"doMouseReleased",function(a,b,c){this.mouseState=JSV.common.PanelData.Mouse.UP;!(null==this.thisWidget&&null==this.currentGraphSet.pendingMeasurement)&&c&&(this.currentGraphSet.mouseReleasedEvent(a,b),this.thisWidget=null,this.isIntegralDrag=!1,this.integralShiftMode=0)},"~N,~N,~B");c(c$,"doMouseClicked",function(a,b,c){var f=JSV.common.GraphSet.findGraphSet(this.graphSets,
a,b);null!=f&&(this.setCurrentGraphSet(f,b),f.mouseClickedEvent(a,b,this.clickCount,c),this.setTaintedAll(),this.repaint())},"~N,~N,~B");c(c$,"hasCurrentMeasurements",function(a){return this.currentGraphSet.hasCurrentMeasurement(a)},"JSV.common.Annotation.AType");c(c$,"getDialog",function(a){return this.currentGraphSet.getDialog(a,-1)},"JSV.common.Annotation.AType");c(c$,"addDialog",function(a,b,c){this.currentGraphSet.addDialog(a,b,c)},"~N,JSV.common.Annotation.AType,JSV.api.AnnotationData");c(c$,
"getPeakListing",function(a,b){null!=a&&this.currentGraphSet.getPeakListing(-1,a,!0);this.currentGraphSet.setPeakListing(b)},"JSV.common.Parameters,Boolean");c(c$,"checkIntegral",function(a,b){this.currentGraphSet.checkIntegralParams(a,b)},"JSV.common.Parameters,~S");c(c$,"setIntegrationRatios",function(a){this.currentGraphSet.setIntegrationRatios(a)},"~S");c(c$,"getView",function(){return this.currentGraphSet.getCurrentView()});c(c$,"closeAllDialogsExcept",function(a){for(var b=this.graphSets.size();0<=
--b;)this.graphSets.get(b).closeDialogsExcept(a)},"JSV.common.Annotation.AType");c(c$,"removeDialog",function(a){this.currentGraphSet.removeDialog(a)},"JSV.dialog.JSVDialog");c(c$,"normalizeIntegral",function(){var a=this.getSelectedIntegral();if(null!=a){var b=a.text;0==b.length&&(b=""+a.getValue());a=this.getInput("Enter a new value for this integral","Normalize Integral",b);try{this.setSelectedIntegral(Double.parseDouble(a))}catch(c){if(!y(c,Exception))throw c;}}});c(c$,"getDrawTitle",function(a){var b=
null;a?b=this.printJobTitle:1==this.nSpectra?b=this.getSpectrum().getPeakTitle():null!=this.viewTitle?(null!=this.currentGraphSet.getTitle(!1)&&(b=this.getSpectrum().getPeakTitle()),null==b&&(b=this.viewTitle)):b=this.jsvp.getTitle().trim();0<=b.indexOf("\n")&&(b=b.substring(0,b.indexOf("\n")).trim());return b},"~B");c(c$,"getPrintJobTitle",function(a){var b=null;1==this.nSpectra?b=this.getSpectrum().getTitle():null!=this.viewTitle?(1==this.graphSets.size()&&(b=this.currentGraphSet.getTitle(a)),null==
b&&(b=this.viewTitle)):b=this.jsvp.getTitle().trim();0<=b.indexOf("\n")?b=b.substring(0,b.indexOf("\n")).trim():b.startsWith("$")&&(b=b.substring(1));return b},"~B");c(c$,"linkSpectra",function(a){a===JSV.common.PanelData.LinkMode.ALL&&(a=2==this.nSpectra?JSV.common.PanelData.LinkMode.AB:3==this.nSpectra?JSV.common.PanelData.LinkMode.ABC:JSV.common.PanelData.LinkMode.NONE);a!==JSV.common.PanelData.LinkMode.NONE&&a.toString().length!=this.nSpectra||this.setGraphSets(a)},"JSV.common.PanelData.LinkMode");
c(c$,"doZoomLinked",function(a,b,c,f,e,h){if(!this.linking){this.linking=!0;for(var j=a.getSpectrumAt(0),k=this.graphSets.size();0<=--k;){var l=this.graphSets.get(k);l!==a&&JSV.common.Spectrum.areXScalesCompatible(j,this.graphSets.get(k).getSpectrumAt(0),!1,!0)&&l.doZoom(b,0,c,0,h,!1,e,!1,f)}this.linking=!1}},"JSV.common.GraphSet,~N,~N,~B,~B,~B");c(c$,"clearLinkViews",function(a){if(!this.linking){this.linking=!0;for(var b=a.getSpectrum(),c=this.graphSets.size();0<=--c;){var f=this.graphSets.get(c);
f!==a&&JSV.common.Spectrum.areXScalesCompatible(b,this.graphSets.get(c).getSpectrum(),!1,!0)&&f.clearViews()}this.linking=!1}},"JSV.common.GraphSet");c(c$,"setlinkedXMove",function(a,b,c){if(!this.linking){this.linking=!0;for(var f=a.getSpectrum(),e=this.graphSets.size();0<=--e;){var h=this.graphSets.get(e);h!==a&&JSV.common.Spectrum.areXScalesCompatible(f,this.graphSets.get(e).getSpectrum(),!1,!0)&&null==h.imageView&&(c?h.setXPixelMovedTo(1.7976931348623157E308,b,0,0):h.setXPixelMovedTo(b,1.7976931348623157E308,
0,0))}this.linking=!1}},"JSV.common.GraphSet,~N,~B");c(c$,"set2DCrossHairsLinked",function(a,b,c,f){for(var e=this.graphSets.size();0<=--e;){var h=this.graphSets.get(e);h!==a&&h.set2DXY(b,c,f)}},"JSV.common.GraphSet,~N,~N,~B");c(c$,"dialogsToFront",function(a){this.currentGraphSet.dialogsToFront(a)},"JSV.common.Spectrum");c(c$,"setColor",function(a,b){null!=b&&this.options.put(a,JU.CU.toRGBHexString(b));switch(a){case JSV.common.ScriptToken.COORDINATESCOLOR:this.coordinatesColor=b;return;case JSV.common.ScriptToken.HIGHLIGHTCOLOR:this.highlightColor=
b;255==this.highlightColor.getOpacity255()&&this.highlightColor.setOpacity255(150);return;case JSV.common.ScriptToken.ZOOMBOXCOLOR:this.zoomBoxColor=b;return;case JSV.common.ScriptToken.ZOOMBOXCOLOR2:this.zoomBoxColor2=b;return;case JSV.common.ScriptToken.BACKGROUNDCOLOR:this.jsvp.setBackgroundColor(this.bgcolor=b);break;case JSV.common.ScriptToken.GRIDCOLOR:this.gridColor=b;break;case JSV.common.ScriptToken.INTEGRALPLOTCOLOR:this.integralPlotColor=b;break;case JSV.common.ScriptToken.PEAKTABCOLOR:this.peakTabColor=
b;break;case JSV.common.ScriptToken.PLOTCOLOR:for(var c=this.graphSets.size();0<=--c;)this.graphSets.get(c).setPlotColor0(b);break;case JSV.common.ScriptToken.PLOTAREACOLOR:this.plotAreaColor=b;break;case JSV.common.ScriptToken.SCALECOLOR:this.scaleColor=b;break;case JSV.common.ScriptToken.TITLECOLOR:this.titleColor=b;break;case JSV.common.ScriptToken.UNITSCOLOR:this.unitsColor=b;break;default:JU.Logger.warn("AwtPanel --- unrecognized color: "+a);return}this.taintedAll=!0},"JSV.common.ScriptToken,javajs.api.GenericColor");
c(c$,"getColor",function(a){switch(a){default:return JU.Logger.error("awtgraphset missing color "+a),this.BLACK;case JSV.common.ScriptToken.ZOOMBOXCOLOR2:return this.zoomBoxColor2;case JSV.common.ScriptToken.ZOOMBOXCOLOR:return this.zoomBoxColor;case JSV.common.ScriptToken.HIGHLIGHTCOLOR:return this.highlightColor;case JSV.common.ScriptToken.INTEGRALPLOTCOLOR:return this.integralPlotColor;case JSV.common.ScriptToken.GRIDCOLOR:return this.gridColor;case JSV.common.ScriptToken.PEAKTABCOLOR:return this.peakTabColor;
case JSV.common.ScriptToken.PLOTAREACOLOR:return this.plotAreaColor;case JSV.common.ScriptToken.SCALECOLOR:return this.scaleColor;case JSV.common.ScriptToken.TITLECOLOR:return this.titleColor;case JSV.common.ScriptToken.UNITSCOLOR:return this.unitsColor}},"JSV.common.ScriptToken");c(c$,"getOverlayLegendData",function(){for(var a=this.currentGraphSet.nSpectra,b=Array(a),c=this.getSpectrumAt(0).getFilePath(),f=this.getSpectrumAt(a-1).getFilePath(),c=!c.equals(f),f=0;f<a;f++){var e=Array(3),h=this.getSpectrumAt(f);
this.title=h.getTitle();c&&(this.title=JSV.common.JSVFileManager.getTagName(h.getFilePath())+" - "+this.title);h=this.getCurrentPlotColor(f);e[0]=new Integer(f+1);e[1]=h;e[2]=" "+this.title;b[f]=e}return b});c(c$,"setColorOrFont",function(a,b){if(null==b){for(var c,f=a.elementColors.entrySet().iterator();f.hasNext()&&((c=f.next())||1);)this.setColorOrFont(a,c.getKey());this.setColorOrFont(a,JSV.common.ScriptToken.DISPLAYFONTNAME);this.setColorOrFont(a,JSV.common.ScriptToken.TITLEFONTNAME)}else{switch(b){case JSV.common.ScriptToken.DISPLAYFONTNAME:this.setFontName(b,
a.displayFontName);return;case JSV.common.ScriptToken.TITLEFONTNAME:this.setFontName(b,a.titleFontName);return}this.setColor(b,a.getElementColor(b))}},"JSV.common.ColorParameters,JSV.common.ScriptToken");c(c$,"getCurrentPlotColor",function(a){return this.currentGraphSet.getPlotColor(a)},"~N");c(c$,"setPrint",function(a,b){null==a?(this.options.putAll(this.optionsSaved),this.optionsSaved=null):(this.printJobTitle=a.title,this.printingFontName=b,this.printGraphPosition=a.position,this.optionsSaved=
new java.util.Hashtable,this.optionsSaved.putAll(this.options),this.gridOn=a.showGrid,this.titleOn=a.showTitle,this.setBoolean(JSV.common.ScriptToken.XSCALEON,a.showXScale),this.setBoolean(JSV.common.ScriptToken.XUNITSON,a.showXScale),this.setBoolean(JSV.common.ScriptToken.YSCALEON,a.showYScale),this.setBoolean(JSV.common.ScriptToken.YUNITSON,a.showYScale))},"JSV.common.PrintLayout,~S");c(c$,"setDefaultPrintOptions",function(a){a.showGrid=this.gridOn;a.showXScale=this.getBoolean(JSV.common.ScriptToken.XSCALEON);
a.showYScale=this.getBoolean(JSV.common.ScriptToken.YSCALEON);a.showTitle=this.titleOn},"JSV.common.PrintLayout");c(c$,"showDialog",function(a){var b=this.getDialog(a);this.closeAllDialogsExcept(a);if(null!=b&&v(b,JSV.dialog.JSVDialog))return b.reEnable();var c=this.getCurrentSpectrumIndex();if(0>c)return this.jsvp.showMessage("To enable "+a+" first select a spectrum by clicking on it.",""+a),null;var f=this.getSpectrum(),e=this.vwr.getDialog(a,f);null==b&&a===JSV.common.Annotation.AType.Measurements&&
(b=new JSV.common.MeasurementData(JSV.common.Annotation.AType.Measurements,f));null!=b&&e.setData(b);this.addDialog(c,a,e);e.reEnable();return e},"JSV.common.Annotation.AType");c(c$,"printPdf",function(a,b){var c=!b.layout.equals("landscape");this.print(a,c?b.imageableHeight:b.imageableWidth,c?b.imageableWidth:b.imageableHeight,b.imageableX,b.imageableY,b.paperHeight,b.paperWidth,c,0)},"J.api.GenericGraphics,JSV.common.PrintLayout");c(c$,"print",function(a,b,c,f,e,h,j,k,l){this.g2d=this.g2d0;if(0==
l)return this.isPrinting=!0,l=!1,v(a,J.api.GenericGraphics)&&(this.g2d=a,a=this.gMain),this.printGraphPosition.equals("default")?k?(b=450,c=280):(b=280,c=450):this.printGraphPosition.equals("fit to page")?l=!0:k?(b=450,c=280,f=x(x(j-c)/2),e=x(x(h-b)/2)):(b=280,c=450,e=x(x(j-280)/2),f=x(x(h-450)/2)),this.g2d.translateScale(a,f,e,0.1),this.setTaintedAll(),this.drawGraph(a,a,a,x(c),x(b),l),this.isPrinting=!1,0;this.isPrinting=!1;return 1},"~O,~N,~N,~N,~N,~N,~N,~B,~N");e(c$,"keyPressed",function(a,b){if(this.isPrinting)return!1;
this.checkKeyControl(a,!0);switch(a){case 27:case 127:case 8:return this.escapeKeyPressed(27!=a),this.isIntegralDrag=!1,this.setTaintedAll(),this.repaint(),!0}var c=0,f=!1;if(0==b)switch(a){case 37:case 39:this.doMouseMoved(39==a?++this.mouseX:--this.mouseX,this.mouseY);this.repaint();f=!0;break;case 33:case 34:c=33==a?JSV.common.GraphSet.RT2:1/JSV.common.GraphSet.RT2;f=!0;break;case 40:case 38:f=40==a?-1:1,null==this.getSpectrumAt(0).getSubSpectra()?this.notifySubSpectrumChange(f,null):(this.advanceSubSpectrum(f),
this.setTaintedAll(),this.repaint()),f=!0}else if(this.checkMod(a,2))switch(a){case 40:case 38:case 45:case 61:c=61==a||38==a?JSV.common.GraphSet.RT2:1/JSV.common.GraphSet.RT2;f=!0;break;case 37:case 39:this.toPeak(39==a?1:-1),f=!0}0!=c&&(this.scaleYBy(c),this.setTaintedAll(),this.repaint());return f},"~N,~N");e(c$,"keyReleased",function(a){this.isPrinting||this.checkKeyControl(a,!1)},"~N");e(c$,"keyTyped",function(a,b){if(this.isPrinting)return!1;switch(a){case "n":if(0!=b)break;this.normalizeIntegral();
return!0;case 26:if(2!=b)break;this.previousView();this.setTaintedAll();this.repaint();return!0;case 25:if(2!=b)break;this.nextView();this.setTaintedAll();this.repaint();return!0}return!1},"~N,~N");e(c$,"mouseAction",function(a,b,c,f,e,h){if(!this.isPrinting)switch(a){case 4:if(!this.checkMod(h,16))break;this.doMousePressed(c,f);break;case 5:this.doMouseReleased(c,f,this.checkMod(h,16));this.setTaintedAll();this.repaint();break;case 1:this.doMouseDragged(c,f);this.repaint();break;case 0:this.jsvp.getFocusNow(!1);
if(0!=(h&28)){this.doMouseDragged(c,f);this.repaint();break}this.doMouseMoved(c,f);null!=this.coordStr&&this.repaint();break;case 2:if(this.checkMod(h,4)){this.jsvp.showMenu(c,f);break}this.ctrlPressed=!1;this.doMouseClicked(c,f,this.updateControlPressed(h))}},"~N,~N,~N,~N,~N,~N");c(c$,"checkMod",function(a,b){return(a&b)==b},"~N,~N");c(c$,"checkKeyControl",function(a,b){switch(a){case 17:case 157:this.ctrlPressed=b;break;case 16:this.shiftPressed=b}},"~N,~B");c(c$,"updateControlPressed",function(a){return this.ctrlPressed=
(new Boolean(this.ctrlPressed|(this.checkMod(a,2)||this.checkMod(a,20)))).valueOf()},"~N");e(c$,"mouseEnterExit",function(a,b,c,f){if(f)this.thisWidget=null,this.isIntegralDrag=!1,this.integralShiftMode=0;else try{this.jsvp.getFocusNow(!1)}catch(e){if(y(e,Exception))System.out.println("pd "+this+" cannot focus");else throw e;}},"~N,~N,~N,~B");c(c$,"setSolutionColor",function(a){var b=0<=a.indexOf("none"),c=0>a.indexOf("false");if(0>a.indexOf("all"))b=b?-1:this.vwr.getSolutionColor(c),this.getSpectrum().setFillColor(-1==
b?null:this.vwr.parameters.getColor1(b));else{a=JSV.common.JSViewer.getInterface("JSV.common.Visible");for(var e=this.graphSets.size();0<=--e;)this.graphSets.get(e).setSolutionColor(a,b,c)}},"~S");c(c$,"setIRMode",function(a,b){for(var c=this.graphSets.size();0<=--c;)this.graphSets.get(c).setIRMode(a,b)},"JSV.common.Spectrum.IRMode,~S");c(c$,"closeSpectrum",function(){this.vwr.close("views");this.vwr.close(this.getSourceID());this.vwr.execView("*",!0)});A(self.c$);c$=s(JSV.common.PanelData,"LinkMode",
Enum);c$.getMode=c(c$,"getMode",function(a){if(a.equals("*"))return JSV.common.PanelData.LinkMode.ALL;for(var b,c=0,e=JSV.common.PanelData.LinkMode.values();c<e.length&&((b=e[c])||1);c++)if(b.name().equalsIgnoreCase(a))return b;return JSV.common.PanelData.LinkMode.NONE},"~S");n(c$,"ALL",0,[]);n(c$,"NONE",1,[]);n(c$,"AB",2,[]);n(c$,"ABC",3,[]);c$=B();A(self.c$);c$=s(JSV.common.PanelData,"Mouse",Enum);n(c$,"UP",0,[]);n(c$,"DOWN",1,[]);c$=B();D(c$,"defaultPrintHeight",450,"defaultPrintWidth",280,"topMargin",
40,"bottomMargin",50,"leftMargin",60,"rightMargin",50)});q("JSV.common");r(null,"JSV.common.PanelNode",["JU.SB","JSV.common.Parameters"],function(){c$=p(function(){this.legend=this.id=this.jsvp=this.fileName=this.source=this.treeNode=null;this.isSimulation=this.isView=this.isSelected=!1;this.frameTitle=null;j(this,arguments)},JSV.common,"PanelNode");m(c$,function(a,b,c,e){this.id=a;this.source=c;this.fileName=b;this.isSimulation=0<=c.getFilePath().indexOf("http://SIMULATION/");this.jsvp=e;null!=e&&
(this.pd().getSpectrumAt(0).setId(a),this.frameTitle=e.getTitle())},"~S,~S,JSV.source.JDXSource,JSV.api.JSVPanel");c(c$,"setTreeNode",function(a){this.treeNode=a},"JSV.api.JSVTreeNode");c(c$,"getTreeNode",function(){return this.treeNode});c(c$,"dispose",function(){this.source.dispose();null!=this.jsvp&&this.jsvp.dispose();this.legend=this.jsvp=this.source=null});c(c$,"pd",function(){return this.jsvp.getPanelData()});c(c$,"getSpectrum",function(){return this.pd().getSpectrum()});c(c$,"setLegend",function(a){null!=
this.legend&&this.legend.dispose();return this.legend=a},"JSV.dialog.JSVDialog");e(c$,"toString",function(){return(null==this.id?"":this.id+": ")+(null==this.frameTitle?this.fileName:this.frameTitle)});c$.findSourceByNameOrId=c(c$,"findSourceByNameOrId",function(a,b){for(var c=b.size();0<=--c;){var e=b.get(c);if(a.equals(e.id)||a.equals(e.source.getSpectra().get(0).sourceID)||e.source.matchesFilePath(a))return e.source}for(c=b.size();0<=--c;)if(e=b.get(c),a.equals(e.fileName))return e.source;return null},
"~S,JU.Lst");c$.findNodeById=c(c$,"findNodeById",function(a,b){if(null!=a)for(var c=b.size();0<=--c;)if(a.equals(b.get(c).id)||a.equals(b.get(c).frameTitle))return b.get(c);return null},"~S,JU.Lst");c$.findNode=c(c$,"findNode",function(a,b){for(var c=b.size();0<=--c;)if(b.get(c).jsvp===a)return b.get(c);return null},"JSV.api.JSVPanel,JU.Lst");c$.getSpectrumListAsString=c(c$,"getSpectrumListAsString",function(a){for(var b=new JU.SB,c=0;c<a.size();c++){var e=a.get(c);e.isView||b.append(" ").append(e.id)}return b.toString().trim()},
"JU.Lst");c$.isOpen=c(c$,"isOpen",function(a,b){if(null!=b)for(var c=a.size();0<=--c&&!a.get(c).source.matchesFilePath(b)&&!b.equals(a.get(c).frameTitle););return-1},"JU.Lst,~S");c(c$,"setFrameTitle",function(a){this.frameTitle=a},"~S");c$.getLastFileFirstNode=c(c$,"getLastFileFirstNode",function(a){for(var b=a.size(),c=0==b?null:a.get(b-1),b=b-1;0<=--b&&a.get(b).source===c.source;)c=a.get(b);return null==c?null:c.jsvp},"JU.Lst");c(c$,"getInfo",function(a){var b=this.pd().getInfo(!1,a);JSV.common.Parameters.putInfo(a,
b,"panelId",this.id);JSV.common.Parameters.putInfo(a,b,"panelFileName",this.fileName);JSV.common.Parameters.putInfo(a,b,"panelSource",this.source.getFilePath());return b},"~S")});q("JSV.common");r(null,"JSV.common.Parameters",["java.lang.Boolean","java.util.Hashtable","JSV.common.ScriptToken"],function(){c$=p(function(){this.name=null;this.integralMinY=0.1;this.integralRange=50;this.integralOffset=30;this.integralDrawAll=!1;this.viewOffset=0;this.peakListThreshold=NaN;this.peakListInterpolation="parabolic";
this.precision=2;this.htBooleans=null;j(this,arguments)},JSV.common,"Parameters");m(c$,function(){this.htBooleans=new java.util.Hashtable;this.setBoolean(JSV.common.ScriptToken.TITLEON,!0);this.setBoolean(JSV.common.ScriptToken.ENABLEZOOM,!0);this.setBoolean(JSV.common.ScriptToken.DISPLAY2D,!0);this.setBoolean(JSV.common.ScriptToken.COORDINATESON,!0);this.setBoolean(JSV.common.ScriptToken.PEAKTABSON,!0);this.setBoolean(JSV.common.ScriptToken.GRIDON,!0);this.setBoolean(JSV.common.ScriptToken.XSCALEON,
!0);this.setBoolean(JSV.common.ScriptToken.YSCALEON,!0);this.setBoolean(JSV.common.ScriptToken.XUNITSON,!0);this.setBoolean(JSV.common.ScriptToken.YUNITSON,!0)});c(c$,"setName",function(a){this.name=a;return this},"~S");c(c$,"getBooleans",function(){return this.htBooleans});c(c$,"setBoolean",function(a,b){this.htBooleans.put(a,Boolean.$valueOf(b));return b},"JSV.common.ScriptToken,~B");c(c$,"getBoolean",function(a){return Boolean.TRUE===this.htBooleans.get(a)},"JSV.common.ScriptToken");c$.isTrue=
c(c$,"isTrue",function(a){return 0==a.length||Boolean.parseBoolean(a)},"~S");c$.getTFToggle=c(c$,"getTFToggle",function(a){return a.equalsIgnoreCase("TOGGLE")?null:JSV.common.Parameters.isTrue(a)?Boolean.TRUE:Boolean.FALSE},"~S");c(c$,"setP",function(a,b,c){switch(b){default:return;case JSV.common.ScriptToken.COORDINATESON:case JSV.common.ScriptToken.DISPLAY1D:case JSV.common.ScriptToken.DISPLAY2D:case JSV.common.ScriptToken.ENABLEZOOM:case JSV.common.ScriptToken.GRIDON:case JSV.common.ScriptToken.PEAKTABSON:case JSV.common.ScriptToken.REVERSEPLOT:case JSV.common.ScriptToken.TITLEON:case JSV.common.ScriptToken.TITLEBOLDON:case JSV.common.ScriptToken.XSCALEON:case JSV.common.ScriptToken.XUNITSON:case JSV.common.ScriptToken.YSCALEON:case JSV.common.ScriptToken.YUNITSON:c=
JSV.common.Parameters.getTFToggle(c);if(null!=c){this.setBoolean(b,c.booleanValue());break}if(null==a)return;c=!a.getBoolean(b);switch(b){case JSV.common.ScriptToken.XSCALEON:this.setBoolean(JSV.common.ScriptToken.XUNITSON,c);a.setBoolean(JSV.common.ScriptToken.XUNITSON,c);break;case JSV.common.ScriptToken.YSCALEON:this.setBoolean(JSV.common.ScriptToken.YUNITSON,c),a.setBoolean(JSV.common.ScriptToken.YUNITSON,c)}this.setBoolean(b,c)}null!=a&&a.setBooleans(this,b)},"JSV.common.PanelData,JSV.common.ScriptToken,~S");
c$.isMatch=c(c$,"isMatch",function(a,b){return null==a||b.equalsIgnoreCase(a)},"~S,~S");c$.putInfo=c(c$,"putInfo",function(a,b,c,e){null!=e&&JSV.common.Parameters.isMatch(a,c)&&b.put(null==a?c:a,e)},"~S,java.util.Map,~S,~O")});q("JSV.common");r(["JSV.common.MeasurementData"],"JSV.common.PeakData",["java.lang.Double","JU.DF","JSV.common.Coordinate","$.PeakPick"],function(){c$=p(function(){this.maxY=this.minY=this.thresh=0;j(this,arguments)},JSV.common,"PeakData",JSV.common.MeasurementData);c(c$,"getThresh",
function(){return this.thresh});e(c$,"getDataHeader",function(){return this.spec.isHNMR()?JSV.common.PeakData.HNMR_HEADER:w(-1,["peak",this.spec.getXUnits(),this.spec.getYUnits()])});e(c$,"getMeasurementListArray",function(){for(var a=Array(this.size()),b=L(-1,[-1E100,1E100,1E100]),c,e=0,g=this.size();0<=--g;e++)c=this.spec.getPeakListArray(this.get(g),b,this.maxY),a[e]=2==c.length?w(-1,[""+(e+1),JU.DF.formatDecimalDbl(c[0],2),JU.DF.formatDecimalDbl(c[1],4)]):w(-1,[""+(e+1),JU.DF.formatDecimalDbl(c[0],
4),JU.DF.formatDecimalDbl(c[1],4),JU.DF.formatDecimalDbl(c[2],2),0==c[3]?"":JU.DF.formatDecimalDbl(c[3],2),0==c[4]?"":JU.DF.formatDecimalDbl(c[4],2),0==c[5]?"":JU.DF.formatDecimalDbl(c[5],2)]);return a},"~S");e(c$,"getMeasurementListArrayReal",function(){for(var a=L(this.size(),0),b=L(-1,[-1E100,1E100,1E100]),c=0,e=this.size();0<=--e;c++)a[c]=this.spec.getPeakListArray(this.get(e),b,this.maxY);return a},"~S");c(c$,"getInfo",function(a){a.put("interpolation",this.myParams.peakListInterpolation);a.put("threshold",
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this.maxY=c.maxYOnScale;var h=c.minXOnScale;c=c.maxXOnScale;this.thresh=this.myParams.peakListThreshold;Double.isNaN(this.thresh)&&(this.thresh=this.myParams.peakListThreshold=(this.minY+this.maxY)/2);var j=0,k=L(-1,[e[0].getYVal(),j=e[1].getYVal(),0]),l=0;if(g)for(g=2;g<e.length;g++){var m=k[g%3]=e[g].getYVal();if(j<this.thresh&&(k[(g-2)%3]>j&&j<m)&&(j=a?JSV.common.Coordinate.parabolicInterpolation(e,g-1):e[g-1].getXVal(),j>=h||j<=c))if(j=(new JSV.common.PeakPick).setValue(j,m,this.spec,null,0),
this.addLast(j),100==++l)break;j=m}else for(g=2;g<e.length;g++){m=k[g%3]=e[g].getYVal();if(j>this.thresh&&(k[(g-2)%3]<j&&j>m)&&(j=a?JSV.common.Coordinate.parabolicInterpolation(e,g-1):e[g-1].getXVal(),j>=h&&j<=c&&(j=(new JSV.common.PeakPick).setValue(j,m,this.spec,JU.DF.formatDecimalDbl(j,b),j),this.addLast(j),100==++l)))break;j=m}}},"JSV.common.Parameters,~N,JSV.common.ScaleData");c$.HNMR_HEADER=c$.prototype.HNMR_HEADER=w(-1,"peak shift/ppm intens shift/hz diff/hz 2-diff 3-diff".split(" "))});q("JSV.common");
r(null,"JSV.common.PeakInfo",["JU.PT"],function(){c$=p(function(){this.px1=this.px0=this.yMax=this.yMin=this.xMax=this.xMin=0;this.atomKey=this._match=this.spectrum=this.id=this.atoms=this.model=this.title=this.filePathForwardSlash=this.file=this.index=this.type2=this.type=this.stringInfo=null;j(this,arguments)},JSV.common,"PeakInfo");m(c$,function(){});m(c$,function(a){this.stringInfo=a;this.type=JU.PT.getQuotedAttribute(a,"type");null==this.type&&(this.type="");this.type=this.type.toUpperCase();
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c(c$,"setYScale",function(a,b,c,e){0==a&&0==b&&(b=1);this.isShiftZoomedY&&(a=this.minYOnScale,b=this.maxYOnScale);var g=this.setScaleParams(a,b,1),h=e?g/2:g/4;e=e?g/4:g/2;this.isShiftZoomedY||(this.minYOnScale=0==a?0:c?h*Math.floor(a/h):a,this.maxYOnScale=c?e*Math.ceil(1.05*b/e):b);this.firstY=0==a?0:Math.floor(a/h)*h;if(0>this.minYOnScale&&0<this.maxYOnScale)for(this.firstY=0;this.firstY-g>this.minYOnScale;)this.firstY-=g;else 0!=this.minYOnScale&&1E-4<Math.abs((a-this.firstY)/h)&&(this.firstY+=
h);c&&(this.initMinYOnScale=this.minYOnScale,this.initMaxYOnScale=this.maxYOnScale,this.initMinY=a,this.initMaxY=b)},"~N,~N,~B,~B");c(c$,"scale2D",function(a){var b=this.maxY-this.minY;1==a?(this.maxY=this.initMaxY,this.minY=this.initMinY):this.maxY=this.minY+b/a},"~N");c(c$,"setXRange",function(a,b){this.minX=a;this.maxX=b;this.setXScale()},"~N,~N");c$.getXRange=c(c$,"getXRange",function(a,b,c,e,g,h,j,k){for(var l=0,m=0,l=g;l<=h;l++)if(g=b[l].getXVal(),g>=c){j[a]=l;break}for(;l<=h&&!(g=b[l].getXVal(),
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b[c].initMaxYOnScale=a[c].initMaxYOnScale,b[c].minY=a[c].minY,b[c].maxY=a[c].maxY,a[c].isShiftZoomedY&&(b[c].isShiftZoomedY=!0,b[c].minYOnScale=a[c].minYOnScale,b[c].maxYOnScale=a[c].maxYOnScale)},"~A,~A");c$.setDataPointIndices=c(c$,"setDataPointIndices",function(a,b,c,e,g,h){for(var j=0,k=a.size(),l=0;l<k;l++){var m=a.get(l).getXYCoords();JSV.common.ScaleData.getXRange(l,m,b,c,0,m.length-1,g,h)>=e&&j++}return j==k},"JU.Lst,~N,~N,~N,~A,~A");c$.fixScale=c(c$,"fixScale",function(a){if(!a.isEmpty())for(;;){for(var b,
c=a.entrySet().iterator();c.hasNext()&&((b=c.next())||1);){var e=b.getValue(),g=e.indexOf("E");0<=g&&(e=e.substring(0,g));if(0>e.indexOf(".")||!e.endsWith("0")&&!e.endsWith("."))return}for(c=a.entrySet().iterator();c.hasNext()&&((b=c.next())||1);)e=b.getValue(),g=e.indexOf("E"),0<=g?b.setValue(e.substring(0,g-1)+e.substring(g)):b.setValue(e.substring(0,e.length-1))}},"java.util.Map");c(c$,"scaleBy",function(a){if(this.isShiftZoomedY){var b=this.isYZeroOnScale()?this.spectrumYRef:(this.minYOnScale+
this.maxYOnScale)/2;this.minYOnScale=b-(b-this.minYOnScale)/a;this.maxYOnScale=b-(b-this.maxYOnScale)/a}else this.spectrumScaleFactor*=a},"~N");D(c$,"NTICKS",E(-1,[2,5,10,10]));c$.LOGTICKS=c$.prototype.LOGTICKS=L(-1,[Math.log10(2),Math.log10(5),0,1])});q("JSV.common");r(["java.lang.Enum"],"JSV.common.ScriptToken",["java.util.Hashtable","JU.Lst","$.PT","$.SB","JSV.common.ScriptTokenizer"],function(){c$=p(function(){this.description=this.tip=null;j(this,arguments)},JSV.common,"ScriptToken",Enum);c(c$,
"getTip",function(){return"  "+("T"===this.tip?"TRUE/FALSE/TOGGLE":"TF"===this.tip?"TRUE or FALSE":"C"===this.tip?"COLOR":this.tip)});m(c$,function(){});m(c$,function(a){this.tip=a;this.description=""},"~S");m(c$,function(a,b){this.tip=a;this.description="-- "+b},"~S,~S");c$.getScriptToken=c(c$,"getScriptToken",function(a){if(null==JSV.common.ScriptToken.htParams){JSV.common.ScriptToken.htParams=new java.util.Hashtable;for(var b,c=0,e=JSV.common.ScriptToken.values();c<e.length&&((b=e[c])||1);c++)JSV.common.ScriptToken.htParams.put(b.name(),
b)}a=JSV.common.ScriptToken.htParams.get(a.toUpperCase());return null==a?JSV.common.ScriptToken.UNKNOWN:a},"~S");c$.getScriptTokenList=c(c$,"getScriptTokenList",function(a,b){null!=a&&(a=a.toUpperCase());var c=new JU.Lst;if(b){var e=JSV.common.ScriptToken.getScriptToken(a);null!=e&&c.addLast(e)}else for(var g=JSV.common.ScriptToken.htParams.entrySet().iterator();g.hasNext()&&((e=g.next())||1);)(null==a||e.getKey().startsWith(a))&&null!=e.getValue().tip&&c.addLast(e.getValue());return c},"~S,~B");
c$.getValue=c(c$,"getValue",function(a,b,c){if(!b.hasMoreTokens())return"";switch(a){default:return JSV.common.ScriptTokenizer.nextStringToken(b,!0);case JSV.common.ScriptToken.CLOSE:case JSV.common.ScriptToken.GETPROPERTY:case JSV.common.ScriptToken.INTEGRATION:case JSV.common.ScriptToken.INTEGRATE:case JSV.common.ScriptToken.JMOL:case JSV.common.ScriptToken.LABEL:case JSV.common.ScriptToken.LOAD:case JSV.common.ScriptToken.PEAK:case JSV.common.ScriptToken.PLOTCOLORS:case JSV.common.ScriptToken.YSCALE:case JSV.common.ScriptToken.WRITE:return JSV.common.ScriptToken.removeCommandName(c);
case JSV.common.ScriptToken.SELECT:case JSV.common.ScriptToken.OVERLAY:case JSV.common.ScriptToken.VIEW:case JSV.common.ScriptToken.ZOOM:return JSV.common.ScriptToken.removeCommandName(c).$replace(","," ").trim()}},"JSV.common.ScriptToken,JSV.common.ScriptTokenizer,~S");c$.removeCommandName=c(c$,"removeCommandName",function(a){var b=a.indexOf(" ");return 0>b?"":a.substring(b).trim()},"~S");c$.getKey=c(c$,"getKey",function(a){var b=a.nextToken();if(b.startsWith("#")||b.startsWith("//"))return null;
b.equalsIgnoreCase("SET")&&(b=a.nextToken());return b.toUpperCase()},"JSV.common.ScriptTokenizer");c$.getTokens=c(c$,"getTokens",function(a){a.startsWith("'")&&a.endsWith("'")&&(a='"'+JU.PT.trim(a,"'")+'"');var b=new JU.Lst;for(a=new JSV.common.ScriptTokenizer(a,!1);a.hasMoreTokens();){var c=JSV.common.ScriptTokenizer.nextStringToken(a,!1);if(c.startsWith("//")||c.startsWith("#"))break;b.addLast(c)}return b},"~S");c$.getNameList=c(c$,"getNameList",function(a){if(0==a.size())return"";for(var b=new JU.SB,
c=0;c<a.size();c++)b.append(",").append(a.get(c).toString());return b.toString().substring(1)},"JU.Lst");c(c$,"getDescription",function(){return this.description});c$.htParams=null;n(c$,"UNKNOWN",0,[]);n(c$,"APPLETID",1,[]);n(c$,"APPLETREADYCALLBACKFUNCTIONNAME",2,[]);n(c$,"AUTOINTEGRATE",3,["TF","automatically integrate an NMR spectrum"]);n(c$,"BACKGROUNDCOLOR",4,["C","set the background color"]);n(c$,"CLOSE",5,["spectrumId or fileName or ALL or VIEWS or SIMULATIONS","close one or more views or simulations"]);
n(c$,"COMPOUNDMENUON",6,[]);n(c$,"COORDCALLBACKFUNCTIONNAME",7,[]);n(c$,"COORDINATESCOLOR",8,["C","set the color of the coordinates shown in the upper right-hand corner"]);n(c$,"COORDINATESON",9,["T","turn on or off the coordinates shown in the upper right-hand corner"]);n(c$,"DEBUG",10,["TF","turn debugging on and off"]);n(c$,"DEFAULTLOADSCRIPT",11,['"script..."',"set the script to be run after each file is loaded"]);n(c$,"DEFAULTNMRNORMALIZATION",12,["maxYvalue","set the value to be given the largest peak in an HMR spectrum"]);
n(c$,"DISPLAYFONTNAME",13,[]);n(c$,"DISPLAY1D",14,["T","turn on or off display of 1D spectra when 1D and 2D spectra are loaded"]);n(c$,"DISPLAY2D",15,["T","turn on or off display of the 2D spectrum when 1D and 2D spectra are loaded"]);n(c$,"ENABLEZOOM",16,["T","allow or disallow zooming"]);n(c$,"ENDINDEX",17,[]);n(c$,"FINDX",18,["value","move the vertical-line cursor to a specific x-axis value"]);n(c$,"GETPROPERTY",19,["[propertyName] or ALL or NAMES","get a property value or all property values as key/value pairs, or a list of names"]);
n(c$,"GETSOLUTIONCOLOR",20,[" FILL or FILLNONE or FILLALL or FILLALLNONE","estimate the solution color for UV/VIS spectra"]);n(c$,"GRIDCOLOR",21,["C","color of the grid"]);n(c$,"GRIDON",22,["T","turn the grid lines on or off"]);n(c$,"HELP",23,["[command]","get this listing or help for a specific command"]);n(c$,"HIDDEN",24,[]);n(c$,"HIGHLIGHTCOLOR",25,["C","set the highlight color"]);n(c$,"HIGHLIGHT",26,["OFF or X1 X2 [OFF] or X1 X2 r g b [a]","turns on or off a highlight color, possibily setting its color, where r g b a are 0-255 or 0.0-1.0"]);
n(c$,"INTEGRALOFFSET",27,["percent","sets the integral offset from baseline"]);n(c$,"INTEGRALRANGE",28,["percent","sets the height of the total integration"]);n(c$,"INTEGRATE",29,["","see INTEGRATION"]);n(c$,"INTEGRATION",30,["ON/OFF/TOGGLE/AUTO/CLEAR/MIN value/MARK ppm1-ppm2:norm,ppm3-ppm4,...","show/hide integration or set integrals (1D 1H NMR only)"]);n(c$,"INTEGRALPLOTCOLOR",31,["C","color of the integration line"]);n(c$,"INTEGRATIONRATIOS",32,["'x:value,x:value,..'","annotate the spectrum with numbers or text at specific x values"]);
n(c$,"INTERFACE",33,["SINGLE or OVERLAY","set how multiple spectra are displayed"]);n(c$,"INVERTY",34,["","invert the Y axis"]);n(c$,"IRMODE",35,["A or T or TOGGLE","set the IR mode to absorption or transmission"]);n(c$,"JMOL",36,["...Jmol command...","send a command to Jmol (if present)"]);n(c$,"JSV",37,[]);n(c$,"LABEL",38,['x y [color and/or "text"]',"add a text label"]);n(c$,"LINK",39,["AB or ABC or NONE or ALL","synchronize the crosshair of a 2D spectrum with 1D cursors"]);n(c$,"LOAD",40,['[APPEND] "fileName" [first] [last]; use "" for current file; $H1/name or $C13/name for simulation',
"load a specturm"]);n(c$,"LOADFILECALLBACKFUNCTIONNAME",41,[]);n(c$,"LOADIMAGINARY",42,["TF","set TRUE to load imaginary NMR component"]);n(c$,"MENUON",43,[]);n(c$,"OBSCURE",44,[]);n(c$,"OVERLAY",45,[]);n(c$,"OVERLAYSTACKED",46,["TF","whether viewed spectra are shown separately, in a stack"]);n(c$,"PEAK",47,["[IR,CNMR,HNMR,MS] [#nnn or ID=xxx or text] [ALL], for example: PEAK HNMR #3","highlights a peak based on its number or title text, optionally checking all loade spectra"]);n(c$,"PEAKCALLBACKFUNCTIONNAME",
48,[]);n(c$,"PEAKLIST",49,["[THRESHOLD=n] [INTERPOLATE=PARABOLIC or NONE]","creates a peak list based on a threshold value and parabolic or no interpolation"]);n(c$,"PEAKTABCOLOR",50,["C","sets the color of peak marks for a peak listing"]);n(c$,"PEAKTABSON",51,["T","show peak tabs for simulated spectra"]);n(c$,"PLOTAREACOLOR",52,["C","sets the color of the plot background"]);n(c$,"PLOTCOLOR",53,["C","sets the color of the graph line"]);n(c$,"PLOTCOLORS",54,["color,color,color,...","sets the colors of multiple plots"]);
n(c$,"PRINT",55,["","prints the current spectrum"]);n(c$,"REVERSEPLOT",56,["T","reverses the x-axis of a spectrum"]);n(c$,"SCALEBY",57,["factor","multiplies the y-scale of the spectrum by a factor"]);n(c$,"SCALECOLOR",58,["C","sets the color of the x-axis and y-axis scales"]);n(c$,"SCRIPT",59,["filename.jsv","runs a script from a file"]);n(c$,"SELECT",60,["spectrumID, spectrumID,...","selects one or more spectra based on IDs"]);n(c$,"SETPEAK",61,["xNew, xOld xNew, ?, or NONE","sets nearest peak to xOld ppm to a new value; NONE resets (1D NMR only)"]);
n(c$,"SETX",62,["xNew, xOld xNew, ?, or NONE","sets an old ppm position in the spectrum to a new value; NONE resets (1D NMR only)"]);n(c$,"SHIFTX",63,["dx or NONE","shifts the x-axis of a 1D NMR spectrum by the given ppm; NONE resets (1D NMR only)"]);n(c$,"SHOWERRORS",64,["shows recent errors"]);n(c$,"SHOWINTEGRATION",65,["T","shows an integration listing"]);n(c$,"SHOWKEY",66,["T","shows a color key when multiple spectra are displayed"]);n(c$,"SHOWMEASUREMENTS",67,["T","shows a listing of measurements"]);
n(c$,"SHOWMENU",68,["displays the popup menu"]);n(c$,"SHOWPEAKLIST",69,["T","shows a listing for peak picking"]);n(c$,"SHOWPROPERTIES",70,["displays the header information of a JDX file"]);n(c$,"SHOWSOURCE",71,["displays the source JDX file associated with the selected data"]);n(c$,"SPECTRUM",72,["id","displays a specific spectrum, where id is a number 1, 2, 3... or a file.spectrum number such as 2.1"]);n(c$,"SPECTRUMNUMBER",73,["n","displays the nth spectrum loaded"]);n(c$,"STACKOFFSETY",74,["percent",
"sets the y-axis offset of stacked spectra"]);n(c$,"STARTINDEX",75,[]);n(c$,"SYNCCALLBACKFUNCTIONNAME",76,[]);n(c$,"SYNCID",77,[]);n(c$,"TEST",78,[]);n(c$,"TITLEON",79,["T","turns the title in the bottom left corner on or off"]);n(c$,"TITLEBOLDON",80,["T","makes the title bold"]);n(c$,"TITLECOLOR",81,["C","sets the color of the title"]);n(c$,"TITLEFONTNAME",82,["fontName","sets the title font"]);n(c$,"UNITSCOLOR",83,["C","sets the color of the x-axis and y-axis units"]);n(c$,"VERSION",84,[]);n(c$,
"VIEW",85,['spectrumID, spectrumID, ... Example: VIEW 3.1, 3.2  or  VIEW "acetophenone"',"creates a view of one or more spectra"]);n(c$,"XSCALEON",86,["T","set FALSE to turn off the x-axis scale"]);n(c$,"XUNITSON",87,["T","set FALSE to turn off the x-axis units"]);n(c$,"YSCALE",88,["[ALL] lowValue highValue"]);n(c$,"YSCALEON",89,["T","set FALSE to turn off the y-axis scale"]);n(c$,"YUNITSON",90,["T","set FALSE to turn off the y-axis units"]);n(c$,"WINDOW",91,[]);n(c$,"WRITE",92,['[XY,DIF,DIFDUP,PAC,FIX,SQZ,AML,CML,JPG,PDF,PNG,SVG] "filename"',
"writes a file in the specified format"]);n(c$,"ZOOM",93,["OUT or PREVIOUS or NEXT or x1,x2 or x1,y1 x2,y2","sets the zoom"]);n(c$,"ZOOMBOXCOLOR",94,[]);n(c$,"ZOOMBOXCOLOR2",95,[])});q("JSV.common");r(null,"JSV.common.ScriptTokenizer",["JU.PT"],function(){c$=p(function(){this.str=null;this.pt=-1;this.len=0;this.isCmd=!1;this.doCheck=!0;j(this,arguments)},JSV.common,"ScriptTokenizer");m(c$,function(a,b){this.str=a;this.len=a.length;this.isCmd=b},"~S,~B");c$.nextStringToken=c(c$,"nextStringToken",function(a,
b){var c=a.nextToken();return b&&'"'==c.charAt(0)&&c.endsWith('"')&&1<c.length?JU.PT.trimQuotes(c):c},"JSV.common.ScriptTokenizer,~B");c(c$,"nextToken",function(){this.doCheck&&this.hasMoreTokens();for(var a=this.pt,b='"'==this.str.charAt(this.pt);++this.pt<this.len;){switch(this.str.charAt(this.pt)){case '"':if(b){if(this.isCmd){b=!1;continue}this.pt++;break}this.isCmd&&(b=!0);continue;case " ":if(!this.isCmd&&!b)break;continue;case ";":case "\n":if(this.isCmd&&!b)break;continue;default:continue}break}this.doCheck=
!0;return this.str.substring(a,this.pt)});c(c$,"hasMoreTokens",function(){for(;++this.pt<this.len;){switch(this.str.charAt(this.pt)){case " ":case ";":case "\n":continue}break}this.doCheck=!1;return this.pt<this.len});c(c$,"getRemainingScript",function(){return this.str.substring(this.pt)})});q("JSV.common");c$=p(function(){this.isub=0;this.title=null;j(this,arguments)},JSV.common,"SubSpecChangeEvent");m(c$,function(a,b){this.isub=a;this.title=b},"~N,~S");c(c$,"isValid",function(){return null!=this.title});
c(c$,"getSubIndex",function(){return this.isub});e(c$,"toString",function(){return this.title});q("JSV.common");r(null,"JSV.common.ViewData",["JSV.common.Coordinate","$.ScaleData"],function(){c$=p(function(){this.thisScale=this.scaleData=null;this.iThisScale=this.nSpectra=0;this.spectra=null;j(this,arguments)},JSV.common,"ViewData");c(c$,"getScaleData",function(){return this.scaleData});c(c$,"getScale",function(){return this.thisScale});m(c$,function(a,b,c,e,g,h,j){this.nSpectra=j?1:a.size();this.scaleData=
Array(this.nSpectra);for(j=0;j<this.nSpectra;j++)this.scaleData[j]=new JSV.common.ScaleData(e[j],g[j]);this.init(a,b,c,h)},"JU.Lst,~N,~N,~A,~A,~B,~B");m(c$,function(a,b,c,e){this.nSpectra=a.size();var g=a.get(0).getXYCoords().length;this.scaleData=Array(1);this.scaleData[0]=new JSV.common.ScaleData(0,g-1);this.init(a,b,c,e)},"JU.Lst,~N,~N,~B");c(c$,"init",function(a,b,c,e){null==a?a=this.spectra:this.spectra=a;this.thisScale=this.scaleData[this.iThisScale=0];for(var g=0;g<this.scaleData.length;g++)this.scaleData[g].userYFactor=
a.get(g).getUserYFactor(),this.scaleData[g].spectrumYRef=a.get(g).getYRef();this.resetScaleFactors();var h=JSV.common.Coordinate.getMinX(a,this),j=JSV.common.Coordinate.getMaxX(a,this),k=JSV.common.Coordinate.getMinYUser(a,this),l=JSV.common.Coordinate.getMaxYUser(a,this);b!=c&&(k=b,l=c,k>l&&(g=k,k=l,l=g));a=a.get(0).isInverted();for(g=0;g<this.scaleData.length;g++)this.scaleData[g].setMinMax(h,j,k,l),this.scaleData[g].setScale(e,a)},"JU.Lst,~N,~N,~B");c(c$,"newSpectrum",function(a){this.init(a,0,
0,!1)},"JU.Lst");c(c$,"setXRangeForSubSpectrum",function(a){this.setXRange(0,a,this.scaleData[0].minX,this.scaleData[0].maxX,0,a.length-1)},"~A");c(c$,"setXRange",function(a,b,c,e,g,h){for(var j=0,k=0,j=g;j<=h;j++)if(g=b[j].getXVal(),g>=c){this.scaleData[a%this.scaleData.length].startDataPointIndex=j;break}for(;j<=h&&!(g=b[j].getXVal(),k++,g>=e);j++);this.scaleData[a%this.scaleData.length].endDataPointIndex=j-1;return k},"~N,~A,~N,~N,~N,~N");c(c$,"getStartingPointIndex",function(a){return this.scaleData[a%
this.scaleData.length].startDataPointIndex},"~N");c(c$,"getEndingPointIndex",function(a){return this.scaleData[a%this.scaleData.length].endDataPointIndex},"~N");c(c$,"areYScalesSame",function(a,b){a%=this.scaleData.length;b%=this.scaleData.length;return this.scaleData[a].minYOnScale==this.scaleData[b].minYOnScale&&this.scaleData[a].maxYOnScale==this.scaleData[b].maxYOnScale},"~N,~N");c(c$,"setScale",function(a,b,c,e){this.iThisScale=a%this.scaleData.length;this.thisScale=this.scaleData[this.iThisScale];
this.thisScale.setXYScale(b,c,e)},"~N,~N,~N,~B");c(c$,"resetScaleFactors",function(){for(var a=0;a<this.scaleData.length;a++)this.scaleData[a].spectrumScaleFactor=1});c(c$,"scaleSpectrum",function(a,b){if(!(0>=b||a>=this.nSpectra))if(-2==a)this.thisScale.scale2D(b);else if(0>a)for(a=0;a<this.scaleData.length;a++)this.scaleData[a].scaleBy(b);else this.scaleData[a%this.scaleData.length].scaleBy(b)},"~N,~N");c(c$,"getNewScales",function(a,b,c,e){if(b)return this.scaleData;a%=this.scaleData.length;b=
(c-this.thisScale.minYOnScale)/(this.thisScale.maxYOnScale-this.thisScale.minYOnScale);e=(e-this.thisScale.minYOnScale)/(this.thisScale.maxYOnScale-this.thisScale.minYOnScale);c=Array(this.scaleData.length);for(var g=0;g<this.scaleData.length;g++)c[g]=0<=a&&g!=a?this.scaleData[g]:new JSV.common.ScaleData;JSV.common.ScaleData.copyScaleFactors(this.scaleData,c);JSV.common.ScaleData.copyYScales(this.scaleData,c);for(g=0;g<this.scaleData.length;g++)0<=a&&g!=a||(c[g].isShiftZoomedY=!0,c[g].minYOnScale=
this.scaleData[g].minYOnScale*(1-b)+b*this.scaleData[g].maxYOnScale,c[g].maxYOnScale=this.scaleData[g].minYOnScale*(1-e)+e*this.scaleData[g].maxYOnScale);return c},"~N,~B,~N,~N")});q("JSV.common");C(JSV.common,"XYScaleConverter");q("JSV.common");c$=s(JSV.common,"ZoomEvent");m(c$,function(){});q("JSV.dialog");r(["JSV.api.AnnotationData","JSV.common.Annotation"],"JSV.dialog.JSVDialog","java.lang.Double JU.DF $.PT JSV.common.IntegralData $.PeakData JSV.dialog.DialogManager".split(" "),function(){c$=
p(function(){this.myParams=this.xyData=this.combo1=this.txt3=this.txt2=this.txt1=this.jsvp=this.dialog=this.manager=this.$spec=this.vwr=this.title=this.type=this.options=this.optionKey=null;this.precision=1;this.showHideButton=this.loc=null;this.defaultVisible=this.isNumeric=this.addApplyBtn=this.addCombo1=this.addClearBtn=!1;this.tableData=this.graphSetKey=this.subType=null;this.addUnits=!1;this.unitPtr=this.formatOptions=this.unitOptions=null;this.isON=!0;this.lastNorm=1;this.iSelected=this.iRowColSelected=
-1;this.skipCreate=!1;this.iColSelected=this.iRowSelected=-1;j(this,arguments)},JSV.dialog,"JSVDialog",JSV.common.Annotation,JSV.api.AnnotationData);c(c$,"setParams",function(a,b,c){this.title=a=JSV.dialog.DialogManager.fixTitle(a);this.vwr=b;this.$spec=c;this.manager=b.getDialogManager();this.jsvp=b.selectedPanel;this.myParams=b.getPlatformInterface("Parameters").setName("dialogParams");this.subType=null==c?"!":c.getTypeLabel();this.optionKey=this.type+"_"+this.subType;this.options=this.manager.getDialogOptions();
null!=c&&(a=c.getDefaultAnnotationInfo(this.type),this.options.put(this.optionKey,a),this.unitOptions=a[0],this.formatOptions=a[1],this.unitPtr=this.options.get(this.optionKey+"_unitPtr"),null==this.unitPtr&&(this.unitPtr=a[2]));switch(this.type){case JSV.common.Annotation.AType.Integration:this.addApplyBtn=this.defaultVisible=this.addClearBtn=this.isNumeric=!0;break;case JSV.common.Annotation.AType.Measurements:this.defaultVisible=this.addCombo1=this.addClearBtn=this.isNumeric=!0;break;case JSV.common.Annotation.AType.PeakList:this.defaultVisible=
this.addApplyBtn=this.isNumeric=!0;break;case JSV.common.Annotation.AType.Views:this.defaultVisible=!0}this.initDialog();return this},"~S,JSV.common.JSViewer,JSV.common.Spectrum");c(c$,"initDialog",function(){this.dialog=this.manager.getDialog(this);this.restoreDialogPosition(this.jsvp,this.getPosXY());this.dialog.setTitle(this.title);this.layoutDialog()});c(c$,"layoutDialog",function(){this.dialog.startLayout();this.addUniqueControls();this.isNumeric&&(this.getUnitOptions(),this.addCombo1&&(this.combo1=
this.dialog.addSelectOption("cmbUnits","Units",this.unitOptions,this.unitPtr.intValue(),this.addUnits)),this.addApplyBtn&&this.dialog.addButton("btnApply","Apply"),this.showHideButton=this.dialog.addButton("btnShow","Show"),this.addClearBtn&&this.dialog.addButton("btnClear","Clear"));this.dialog.endLayout();this.checkEnables();this.dialog.setVisible(this.defaultVisible)});c(c$,"callbackAD",function(a,b){if(a.equals("FOCUS"))this.eventFocus();else if(a.equals("tableSelect"))this.tableSelect(b);else if(a.equals("btnClear"))this.clear();
else if(a.equals("btnApply"))this.eventApply();else if(a.equals("btnShow")){var c=this.dialog.getText(this.showHideButton);this.eventShowHide(c.equals("Show"))}else if(a.equals("cmbUnits"))this.setPrecision(this.dialog.getSelectedIndex(this.combo1));else if(a.startsWith("txt"))this.eventApply();else if(a.equals("windowClosing"))return this.done(),!0;null!=this.jsvp&&this.jsvp.doRepaint(!0);return!0},"~S,~S");c(c$,"addUniqueControls",function(){},"JSV.dialog.DialogManager");e(c$,"getAType",function(){return this.type});
e(c$,"getGraphSetKey",function(){return this.graphSetKey});e(c$,"setGraphSetKey",function(a){this.graphSetKey=a},"~S");e(c$,"getSpectrum",function(){return this.$spec});e(c$,"getState",function(){return this.isON});e(c$,"setState",function(a){this.isON=a},"~B");c(c$,"checkEnables",function(){var a=this.checkVisible();this.dialog.setText(this.showHideButton,a?"Hide":"Show")});c(c$,"createTable",function(a,b,c){this.tableData=a;this.dialog.createTable(a,b,c)},"~A,~A,~A");c(c$,"setTableSelectionEnabled",
function(a){this.dialog.setCellSelectionEnabled(a)},"~B");c(c$,"getParameters",function(){return this.myParams});c(c$,"showMessage",function(a,b,c){this.manager.showMessageDialog(this.dialog,a,b,c)},"~S,~S,~N");c(c$,"setThreshold",function(a){this.dialog.setText(this.txt1,this.getThreasholdText(a))},"~N");c(c$,"setComboSelected",function(a){this.dialog.setSelectedIndex(this.combo1,a)},"~N");c(c$,"applyFromFields",function(){this.apply(null)});c(c$,"reEnable",function(){this.paramsReEnable();return this});
c(c$,"dispose",function(){this.dialog.dispose()});c(c$,"setVisible",function(a){this.dialog.setVisible(a)},"~B");e(c$,"isVisible",function(){return this.dialog.isVisible()});c(c$,"selectTableRow",function(a){this.dialog.selectTableRow(a)},"~N");c(c$,"repaint",function(){this.dialog.repaint()});c(c$,"setFields",function(){switch(this.type){case JSV.common.Annotation.AType.PeakList:this.myParams=this.xyData.getParameters(),this.setThreshold(this.myParams.peakListThreshold),this.setComboSelected(this.myParams.peakListInterpolation.equals("none")?
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Double.parseDouble(c),h=Double.parseDouble(this.tableData[a+3-b][1]);this.jsvp.getPanelData().setXPointers(this.$spec,g,this.$spec,h);break;default:this.jsvp.getPanelData().findX(this.$spec,Double.parseDouble(c))}}catch(j){if(y(j,Exception))this.jsvp.getPanelData().findX(this.$spec,1E100);else throw j;}this.jsvp.doRepaint(!1);break;case JSV.common.Annotation.AType.OverlayLegend:this.jsvp.getPanelData().setSpectrum(a,!1)}}catch(k){if(!y(k,Exception))throw k;}}},"~N,~N");c(c$,"loadData",function(){var a,
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e,g)},"~S,javajs.awt.Font,~O,~N,~N,~N");c$.allocateRgbImage=c(c$,"allocateRgbImage",function(a,b,c,e,g,h){null==h&&(h={width:a,height:b});h.buf32=c},"~N,~N,~A,~N,~B,~O");c$.getStaticGraphics=c(c$,"getStaticGraphics",function(a){return JSV.js2d.Image.getGraphics(a)},"~O,~B");c$.getGraphics=c(c$,"getGraphics",function(a){return a.getContext("2d")},"~O");c$.drawImage=c(c$,"drawImage",function(a,b,c,e){this.fromIntARGB(b.buf32,b.buf8);a.putImageData(b.imgdata,c,e)},"~O,~O,~N,~N,~N,~N");q("JSV.js2d");
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this.observedNucl;a.offset=this.offset;a.dataPointNum=this.dataPointNum;a.shiftRefType=this.shiftRefType;a.$isHZtoPPM=this.$isHZtoPPM;a.numDim=this.numDim;a.nucleusX=this.nucleusX;a.nucleusY=this.nucleusY;a.freq2dX=this.freq2dX;a.freq2dY=this.freq2dY;a.setFilePath(this.filePath);a.nH=this.nH},"JSV.source.JDXDataObject");c(c$,"getTypeLabel",function(){return this.isNMR()?this.nucleusX+"NMR":this.dataType});c(c$,"getDefaultAnnotationInfo",function(a){var b,c=this.isNMR();switch(a){case JSV.common.Annotation.AType.Integration:return w(-1,
[null,E(-1,[1]),null]);case JSV.common.Annotation.AType.Measurements:return a=c?w(-1,["Hz","ppm"]):w(-1,[""]),b=this.isHNMR()?E(-1,[1,4]):E(-1,[1,3]),w(-1,[a,b,Integer.$valueOf(0)]);case JSV.common.Annotation.AType.PeakList:return a=c?w(-1,["Hz","ppm"]):w(-1,[""]),b=this.isHNMR()?E(-1,[1,2]):E(-1,[1,1]),w(-1,[a,b,Integer.$valueOf(c?1:0)])}return null},"JSV.common.Annotation.AType");c(c$,"getPeakListArray",function(a,b,c){var e=a.getXVal();a=a.getYVal();this.isNMR()&&(a/=c);c=Math.abs(e-b[0]);b[0]=
e;var g=c+b[1];b[1]=c;var h=g+b[2];b[2]=g;return this.isNMR()?L(-1,[e,a,e*this.observedFreq,20<c*this.observedFreq?0:c*this.observedFreq,20<g*this.observedFreq?0:g*this.observedFreq,20<h*this.observedFreq?0:h*this.observedFreq]):L(-1,[e,a])},"JSV.common.Measurement,~A,~N");D(c$,"ERROR",1.7976931348623157E308,"SCALE_NONE",0,"SCALE_TOP",1,"SCALE_BOTTOM",2,"SCALE_TOP_BOTTOM",3,"gyroData",L(-1,[1,42.5774806,2,6.53590131,3,45.4148,3,32.436,6,6.2661,7,16.5483,9,5.9842,10,4.5752,11,13.663,13,10.70839657,
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2.8463,99,9.6294,99,1.9553,101,2.1916,103,1.3477,105,1.957,107,1.7331,109,1.9924,111,9.0692,113,9.4871,113,9.3655,115,9.3856,115,14.0077,117,15.261,119,15.966,121,10.2551,123,5.5532,123,11.2349,125,13.5454,127,8.5778,129,11.8604,131,3.5159,133,5.6234,135,4.2582,137,4.7634,138,5.6615,139,6.0612,137,4.88,139,5.39,141,2.37,141,13.0359,143,2.319,145,1.429,143,11.59,147,5.62,147,1.7748,149,14631,151,10.5856,153,4.6745,155,1.312,157,1.72,159,10.23,161,1.4654,163,2.0508,165,9.0883,167,1.2281,169,3.531,171,
7.5261,173,2.073,175,4.8626,176,3.451,177,1.7282,179,1.0856,180,4.087,181,5.1627,183,1.7957,185,9.7176,187,9.817,187,0.9856,189,3.3536,191,0.7658,191,0.8319,195,9.2922,197,0.7406,199,7.7123,201,2.8469,203,24.7316,205,24.9749,207,9.034,209,6.963,209,11.7,211,9.16,223,5.95,223,1.3746,225,11.187,227,5.6,229,1.4,231,10.2,235,0.83,237,9.57,239,3.09,243,4.6,1E100]))});q("JSV.source");r(null,"JSV.source.JDXDecompressor",["java.lang.Double","JSV.common.Coordinate","JU.Logger"],function(){c$=p(function(){this.lineNumber=
this.ich=this.nPoints=this.deltaX=this.yFactor=this.xFactor=0;this.t=null;this.dx=this.firstX=0;this.maxY=4.9E-324;this.minY=1.7976931348623157E308;this.debugging=!1;this.xyCoords=null;this.ipt=0;this.lastLine=this.line=null;this.lineLen=0;this.errorLog=null;this.lastDif=this.difVal=-2147483648;this.yval=this.xval=this.dupCount=0;this.firstLastX=null;j(this,arguments)},JSV.source,"JDXDecompressor");c(c$,"getMinY",function(){return this.minY});c(c$,"getMaxY",function(){return this.maxY});m(c$,function(a,
b,c,e,g,h){this.t=a;this.firstX=b;this.xFactor=c;this.yFactor=e;this.deltaX=g;this.nPoints=h;this.lineNumber=a.labelLineNo;this.debugging=JU.Logger.isActiveLevel(6)},"JSV.source.JDXSourceStreamTokenizer,~N,~N,~N,~N,~N");c(c$,"addPoint",function(a){if(this.ipt==this.xyCoords.length){var b=Array(2*this.ipt);System.arraycopy(this.xyCoords,0,b,0,this.ipt);this.xyCoords=b}b=a.getYVal();b>this.maxY?this.maxY=b:b<this.minY&&(this.minY=b);this.debugging&&this.logError("Coord: "+this.ipt+a);this.xyCoords[this.ipt++]=
a;this.firstLastX[1]=a.getXVal()},"JSV.common.Coordinate");c(c$,"decompressData",function(a,b){this.errorLog=a;this.firstLastX=b;this.debugging&&this.logError("firstX="+this.firstX+" xFactor="+this.xFactor+" yFactor="+this.yFactor+" deltaX="+this.deltaX+" nPoints="+this.nPoints);this.testAlgorithm();this.xyCoords=Array(this.nPoints);var c=Math.abs(0.35*this.deltaX),e=Math.abs(1.4*this.deltaX),g=Math.abs(0.6*this.deltaX);try{for(;null!=(this.line=this.t.readLineTrimmed())&&0>this.line.indexOf("##");)if(this.lineNumber++,
this.debugging&&this.logError(this.lineNumber+"\t"+this.line),0!=(this.lineLen=this.line.length)){this.ich=0;var h=-2147483648!=this.lastDif;this.xval=this.getValueDelim()*this.xFactor;0==this.ipt&&(b[0]=this.xval,this.dx=this.firstX-this.xval);this.xval+=this.dx;var j=(new JSV.common.Coordinate).set(this.xval,(this.yval=this.getYValue())*this.yFactor);if(0==this.ipt)this.addPoint(j);else{var k=this.xyCoords[this.ipt-1],l=Math.abs(k.getXVal()-j.getXVal());if(h&&l<c){this.xyCoords[this.ipt-1]=j;var m=
k.getYVal(),n=j.getYVal();n!=m&&this.logError(this.lastLine+"\n"+this.line+"\nY-value Checkpoint Error! Line "+this.lineNumber+" for y1="+n+" y0="+m)}else this.addPoint(j),(l<g||l>e)&&this.logError(this.lastLine+"\n"+this.line+"\nX-sequence Checkpoint Error! Line "+this.lineNumber+" |x1-x0|="+l+" instead of "+Math.abs(this.deltaX)+" for x1="+j.getXVal()+" x0="+k.getXVal())}for(;this.ich<this.lineLen||-2147483648!=this.difVal||0<this.dupCount;)this.xval+=this.deltaX,Double.isNaN(this.yval=this.getYValue())||
this.addPoint((new JSV.common.Coordinate).set(this.xval,this.yval*this.yFactor));this.lastLine=this.line}}catch(p){if(!y(p,java.io.IOException))throw p;}this.nPoints!=this.ipt&&(this.logError("Decompressor did not find "+this.nPoints+" points -- instead "+this.ipt),c=Array(this.ipt),System.arraycopy(this.xyCoords,0,c,0,this.ipt),this.xyCoords=c);return 0<this.deltaX?this.xyCoords:JSV.common.Coordinate.reverse(this.xyCoords)},"JU.SB,~A");c(c$,"logError",function(a){this.debugging&&JU.Logger.debug(a);
this.errorLog.append(a).appendC("\n")},"~S");c(c$,"getYValue",function(){if(0<this.dupCount)return--this.dupCount,this.yval=-2147483648==this.lastDif?this.yval:this.yval+this.lastDif;if(-2147483648!=this.difVal)return this.yval+=this.difVal,this.lastDif=this.difVal,this.difVal=-2147483648,this.yval;if(this.ich==this.lineLen)return NaN;var a=this.line.charAt(this.ich);this.debugging&&JU.Logger.info(""+a);switch(a){case "%":this.difVal=0;break;case "J":case "K":case "L":case "M":case "N":case "O":case "P":case "Q":case "R":this.difVal=
a.charCodeAt(0)-73;break;case "j":case "k":case "l":case "m":case "n":case "o":case "p":case "q":case "r":this.difVal=105-a.charCodeAt(0);break;case "S":case "T":case "U":case "V":case "W":case "X":case "Y":case "Z":this.dupCount=a.charCodeAt(0)-82;break;case "s":this.dupCount=9;break;case "+":case "-":case ".":case "0":case "1":case "2":case "3":case "4":case "5":case "6":case "7":case "8":case "9":case "@":case "A":case "B":case "C":case "D":case "E":case "F":case "G":case "H":case "I":case "a":case "b":case "c":case "d":case "e":case "f":case "g":case "h":case "i":return this.lastDif=
-2147483648,this.getValue();case "?":return this.lastDif=-2147483648,NaN;default:return this.ich++,this.lastDif=-2147483648,this.getYValue()}this.ich++;-2147483648!=this.difVal?this.difVal=this.getDifDup(this.difVal):this.dupCount=this.getDifDup(this.dupCount)-1;return this.getYValue()});c(c$,"getDifDup",function(a){var b=this.ich;this.next();var c=a+this.line.substring(b,this.ich);return b==this.ich?a:Integer.$valueOf(c).intValue()},"~N");c(c$,"getValue",function(){var a=this.ich;if(this.ich==this.lineLen)return NaN;
var a=this.line.charAt(this.ich),b=0;switch(a){case "+":case "-":case ".":case "0":case "1":case "2":case "3":case "4":case "5":case "6":case "7":case "8":case "9":return this.getValueDelim();case "@":case "A":case "B":case "C":case "D":case "E":case "F":case "G":case "H":case "I":b=a.charCodeAt(0)-64;a=++this.ich;break;case "a":case "b":case "c":case "d":case "e":case "f":case "g":case "h":case "i":b=96-a.charCodeAt(0);a=++this.ich;break;default:return this.ich++,this.getValue()}this.next();return Double.$valueOf(b+
this.line.substring(a,this.ich)).doubleValue()});c(c$,"getValueDelim",function(){for(var a=this.ich,b="\x00";this.ich<this.lineLen&&0<=" ,\t\n".indexOf(b=this.line.charAt(this.ich));)this.ich++;var c=1;switch(b){case "-":c=-1;case "+":a=++this.ich}b=this.next();if("E"==b&&this.ich+3<this.lineLen)switch(this.line.charAt(this.ich+1)){case "-":case "+":this.ich+=4,this.ich<this.lineLen&&("0"<=(b=this.line.charAt(this.ich))&&"9">=b)&&this.ich++}return c*Double.$valueOf(this.line.substring(a,this.ich)).doubleValue()});
c(c$,"next",function(){for(;this.ich<this.lineLen&&0>"+-%@ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrs? ,\t\n".indexOf(this.line.charAt(this.ich));)this.ich++;return this.ich==this.lineLen?"\x00":this.line.charAt(this.ich)});c(c$,"testAlgorithm",function(){});D(c$,"allDelim","+-%@ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrs? ,\t\n","WHITE_SPACE"," ,\t\n")});q("JSV.source");r(["JU.Lst"],"JSV.source.JDXHeader",null,function(){c$=p(function(){this.title="";this.jcampdx="5.01";this.origin=this.dataClass=
this.dataType="";this.owner="PUBLIC DOMAIN";this.time=this.date=this.longDate="";this.headerTable=this.qualifiedType=null;j(this,arguments)},JSV.source,"JDXHeader");F(c$,function(){this.headerTable=new JU.Lst});c(c$,"setTitle",function(a){this.title=a},"~S");c(c$,"setJcampdx",function(a){this.jcampdx=a},"~S");c(c$,"setDataType",function(a){this.dataType=a},"~S");c(c$,"setDataClass",function(a){this.dataClass=a},"~S");c(c$,"setOrigin",function(a){this.origin=a},"~S");c(c$,"setOwner",function(a){this.owner=
a},"~S");c(c$,"setLongDate",function(a){this.longDate=a},"~S");c(c$,"setDate",function(a){this.date=a},"~S");c(c$,"setTime",function(a){this.time=a},"~S");c(c$,"getTitle",function(){return this.title});c$.getTypeName=c(c$,"getTypeName",function(a){a=a.toUpperCase();for(var b=0;b<JSV.source.JDXHeader.typeNames.length;b++)if(JSV.source.JDXHeader.typeNames[b].startsWith(a))return JSV.source.JDXHeader.typeNames[b].substring(18);return a},"~S");c(c$,"getQualifiedDataType",function(){return null==this.qualifiedType?
this.qualifiedType=JSV.source.JDXHeader.getTypeName(this.dataType):this.qualifiedType});c(c$,"getJcampdx",function(){return this.jcampdx});c(c$,"getDataType",function(){return this.dataType});c(c$,"getOrigin",function(){return this.origin});c(c$,"getOwner",function(){return this.owner});c(c$,"getLongDate",function(){return this.longDate});c(c$,"getDate",function(){return this.date});c(c$,"getTime",function(){return this.time});c(c$,"getDataClass",function(){return this.dataClass});c(c$,"setHeaderTable",
function(a){this.headerTable=a},"JU.Lst");c(c$,"getHeaderTable",function(){return this.headerTable});c(c$,"getHeaderRowDataAsArray",function(a,b){var c=Array((a?6:5)+this.headerTable.size()+b),e=0;c[e++]=w(-1,["##TITLE",this.title]);c[e++]=w(-1,["##JCAMP-DX",this.jcampdx]);c[e++]=w(-1,["##DATA TYPE",this.dataType]);a&&(c[e++]=w(-1,["##DATA CLASS",this.dataClass]));c[e++]=w(-1,["##ORIGIN",this.origin]);c[e++]=w(-1,["##OWNER",this.owner]);for(var g=0;g<this.headerTable.size();g++)c[e++]=this.getRow(g);
return c},"~B,~N");c(c$,"getRow",function(a){a=this.headerTable.get(a);return[a[0],JU.PT.rep(a[1],"<","&lt;")]},"~N");D(c$,"typeNames",w(-1,"ND NMR SPECTRUM   NMR;NMR SPECTRUM      NMR;INFRARED SPECTRUM IR;MASS SPECTRUM     MS;RAMAN SPECTRUM    RAMAN;GAS CHROMATOGRAM  GC;UV/VIS SPECTRUM   UV/VIS".split(";")))});q("JSV.source");r(["J.api.JmolJDXMOLReader"],"JSV.source.JDXReader","java.io.BufferedReader $.StringReader java.lang.Double $.Float java.util.Hashtable $.StringTokenizer JU.Lst $.PT $.SB JSV.api.JSVZipReader JSV.common.Coordinate $.JSVFileManager $.JSViewer $.PeakInfo $.Spectrum JSV.exception.JSVException JSV.source.JDXDecompressor $.JDXSource $.JDXSourceStreamTokenizer JU.Logger".split(" "),
function(){c$=p(function(){this.nmrMaxY=NaN;this.errorLog=this.t=this.source=null;this.isZipFile=this.done=this.obscure=!1;this.filePath=null;this.loadImaginary=!0;this.isTabularData=this.isSimulation=!1;this.blockID=this.nSpec=this.lastSpec=this.firstSpec=0;this.peakData=this.acdMolFile=this.acdAssignments=this.modelSpectrum=this.reader=this.mpr=null;j(this,arguments)},JSV.source,"JDXReader",null,J.api.JmolJDXMOLReader);c$.getVarList=c(c$,"getVarList",function(a){a=JSV.source.JDXReader.VAR_LIST_TABLE[0].indexOf(a);
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"stream",b,c,-1,-1,e)},"java.io.InputStream,~B,~B,~N");c$.createJDXSource=c(c$,"createJDXSource",function(a,b,c,e,g,h,j){var k=null;try{null==a&&(a=JSV.common.JSVFileManager.getBufferedReaderFromName(b,"##TITLE"));a.mark(400);var l=W(400,"\x00");a.read(l,0,400);a.reset();var k=String.instantialize(l),m=k.indexOf("#"),n=k.indexOf("<");if(0>m||0<=n&&n<m){var p=k.toLowerCase(),p=p.contains("<animl")||p.contains("<!doctype technique")?"AnIML":p.contains("xml-cml")?"CML":null;c=null;null!=p&&(c=JSV.common.JSViewer.getInterface("JSV.source."+
p+"Reader").getSource(b,a));a.close();if(null==c)throw JU.Logger.error(k+"..."),new JSV.exception.JSVException("File type not recognized");return c}return(new JSV.source.JDXReader(b,c,e,g,h,j)).getJDXSource(a)}catch(q){if(y(q,Exception))throw null!=a&&a.close(),null!=k&&JU.Logger.error(k+"..."),a=q.getMessage(),new JSV.exception.JSVException("Error reading data: "+a);throw q;}},"java.io.BufferedReader,~S,~B,~B,~N,~N,~N");c(c$,"getJDXSource",function(a){this.source=new JSV.source.JDXSource(0,this.filePath);
this.isZipFile=v(a,JSV.api.JSVZipReader);this.t=new JSV.source.JDXSourceStreamTokenizer(a);this.errorLog=new JU.SB;for(var b=a=null,c=!1;!this.done&&"##TITLE".equals(this.t.peakLabel());){c=!0;null!=a&&!this.isZipFile&&this.errorLog.append("Warning - file is a concatenation without LINK record -- does not conform to IUPAC standards!\n");for(var e=new JSV.common.Spectrum,g=new JU.Lst;!this.done&&null!=(a=this.t.getLabel())&&null!=(b=this.getValue(a));)if(this.isTabularData){this.setTabularDataType(e,
a);if(!this.processTabularData(e,g))throw new JSV.exception.JSVException("Unable to read JDX file");this.addSpectrum(e,!1);this.isSimulation&&e.getXUnits().equals("PPM")&&e.setHZtoPPM(!0);e=null}else a.equals("##DATATYPE")&&b.toUpperCase().equals("LINK")?(this.getBlockSpectra(g),e=null):a.equals("##NTUPLES")||a.equals("##VARNAME")?(this.getNTupleSpectra(g,e,a),e=null):(null==e&&(e=new JSV.common.Spectrum),this.readDataLabel(e,a,b,this.errorLog,this.obscure)||(JSV.source.JDXReader.addHeader(g,this.t.rawLabel,
b),this.checkCustomTags(e,a,b)))}if(!c)throw new JSV.exception.JSVException("##TITLE record not found");this.source.setErrorLog(this.errorLog.toString());return this.source},"~O");c(c$,"getValue",function(a){var b=this.isTabularDataLabel(a)?"":this.t.getValue();return"##END".equals(a)?null:b},"~S");c(c$,"isTabularDataLabel",function(a){return this.isTabularData=0<="##DATATABLE##PEAKTABLE##XYDATA##XYPOINTS#".indexOf(a+"#")},"~S");c(c$,"addSpectrum",function(a,b){if(!this.loadImaginary&&a.isImaginary())return JU.Logger.info("FileReader skipping imaginary spectrum -- use LOADIMAGINARY TRUE to load this spectrum."),
!0;if(null!=this.acdAssignments){if(!a.dataType.equals("MASS SPECTRUM")&&!a.isContinuous())return JU.Logger.info("Skipping ACD Labs line spectrum for "+a),!0;if(0<this.acdAssignments.size())try{this.mpr.setACDAssignments(a.title,a.getTypeLabel(),this.source.peakCount,this.acdAssignments,this.acdMolFile)}catch(c){if(y(c,Exception))JU.Logger.info("Failed to create peak data: "+c);else throw c;}null!=this.acdMolFile&&JSV.common.JSVFileManager.cachePut("mol",this.acdMolFile)}Float.isNaN(this.nmrMaxY)?
1E4<=a.getMaxY()&&a.doNormalize(1E3):a.doNormalize(this.nmrMaxY);this.isSimulation&&a.setSimulated(this.filePath);this.nSpec++;if(0<this.firstSpec&&this.nSpec<this.firstSpec)return!0;if(0<this.lastSpec&&this.nSpec>this.lastSpec)return!(this.done=!0);a.setBlockID(this.blockID);this.source.addJDXSpectrum(null,a,b);return!0},"JSV.common.Spectrum,~B");c(c$,"getBlockSpectra",function(a){JU.Logger.debug("--JDX block start--");for(var b="",c=null,e=0==this.source.type,g=!1;null!=(b=this.t.getLabel())&&!b.equals("##TITLE");)c=
this.getValue(b),e&&!JSV.source.JDXReader.readHeaderLabel(this.source,b,c,this.errorLog,this.obscure)&&JSV.source.JDXReader.addHeader(a,this.t.rawLabel,c),b.equals("##BLOCKS")&&100<JU.PT.parseInt(c)&&0>=this.firstSpec&&(g=!0);c=this.getValue(b);if(!"##TITLE".equals(b))throw new JSV.exception.JSVException("Unable to read block source");e&&this.source.setHeaderTable(a);this.source.type=1;this.source.isCompoundSource=!0;e=new JSV.common.Spectrum;a=new JU.Lst;this.readDataLabel(e,b,c,this.errorLog,this.obscure);
try{for(var h;null!=(h=this.t.getLabel());){if(null==(c=this.getValue(h))&&"##END".equals(b)){JU.Logger.debug("##END= "+this.t.getValue());break}b=h;if(this.isTabularData){if(this.setTabularDataType(e,b),!this.processTabularData(e,a))throw new JSV.exception.JSVException("Unable to read Block Source");}else{if(b.equals("##DATATYPE")&&c.toUpperCase().equals("LINK"))this.getBlockSpectra(a),b=e=null;else if(b.equals("##NTUPLES")||b.equals("##VARNAME"))this.getNTupleSpectra(a,e,b),e=null,b="";if(this.done)break;
if(null==e){e=new JSV.common.Spectrum;a=new JU.Lst;if(""===b)continue;if(null==b){b="##END";continue}}if(null==c){if(0<e.getXYCoords().length&&!this.addSpectrum(e,g))return this.source;e=new JSV.common.Spectrum;a=new JU.Lst}else this.readDataLabel(e,b,c,this.errorLog,this.obscure)||(JSV.source.JDXReader.addHeader(a,this.t.rawLabel,c),this.checkCustomTags(e,b,c))}}}catch(j){if(y(j,Exception))throw new JSV.exception.JSVException(j.getMessage());throw j;}this.addErrorLogSeparator();this.source.setErrorLog(this.errorLog.toString());
JU.Logger.debug("--JDX block end--");return this.source},"JU.Lst");c(c$,"addErrorLogSeparator",function(){0<this.errorLog.length()&&this.errorLog.lastIndexOf("=====================\n")!=this.errorLog.length()-22&&this.errorLog.append("=====================\n")});c(c$,"getNTupleSpectra",function(a,b,c){var e=L(-1,[1.7976931348623157E308,4.9E-324]);this.blockID=Math.random();0<this.firstSpec&&(b.numDim=1);var g=c.equals("##VARNAME");g||(c="");var h=new java.util.Hashtable,j=Array(2);0==this.source.type&&
(this.source.type=2,this.source.isCompoundSource=!0,this.source.setHeaderTable(a));for(;!(c=g?c:this.t.getLabel()).equals("##PAGE");){for(var g=!1,k=new java.util.StringTokenizer(this.t.getValue(),","),l=new JU.Lst;k.hasMoreTokens();)l.addLast(k.nextToken().trim());h.put(c,l)}g=h.get("##SYMBOL");if(!c.equals("##PAGE"))throw new JSV.exception.JSVException("Error Reading NTuple Source");for(var k=this.t.getValue(),l=null,m=!0;!this.done;){if((c=this.t.getLabel()).equals("##ENDNTUPLES")){this.t.getValue();
break}if(c.equals("##PAGE"))k=this.t.getValue();else{if(null==l&&(l=new JSV.common.Spectrum,b.copyTo(l),l.setTitle(b.getTitle()),!l.is1D())){var n=k.indexOf("=");if(0<=n)try{l.setY2D(Double.parseDouble(k.substring(n+1).trim()));var p=k.substring(0,n).trim(),q=g.indexOf(p);0<=q&&l.setY2DUnits(h.get("##UNITS").get(q))}catch(r){if(!y(r,Exception))throw r;}}n=new JU.Lst;for(l.setHeaderTable(n);!c.equals("##DATATABLE");)JSV.source.JDXReader.addHeader(n,this.t.rawLabel,this.t.getValue()),c=this.t.getLabel();
c=!0;q=this.t.flushLine();0<q.trim().indexOf("PEAKS")&&(c=!1);var s=q.indexOf("("),v=q.lastIndexOf(")");if(-1==s||-1==v)throw new JSV.exception.JSVException("Variable List not Found");s=q.substring(s,v+1);for(q=v=0;q<g.size();q++){var w=g.get(q).trim();-1!=s.indexOf(w)&&(j[v++]=w);if(2==v)break}this.setTabularDataType(l,"##"+(c?"XYDATA":"PEAKTABLE"));if(!this.readNTUPLECoords(l,h,j,e))throw new JSV.exception.JSVException("Unable to read Ntuple Source");l.nucleusX.equals("?")||(b.nucleusX=l.nucleusX);
b.nucleusY=l.nucleusY;b.freq2dX=l.freq2dX;b.freq2dY=l.freq2dY;b.y2DUnits=l.y2DUnits;for(q=0;q<a.size();q++)c=a.get(q),s=JSV.source.JDXSourceStreamTokenizer.cleanLabel(c[0]),!s.equals("##TITLE")&&(!s.equals("##DATACLASS")&&!s.equals("##NTUPLES"))&&n.addLast(c);this.addSpectrum(l,!m);m=!1;l=null}}this.addErrorLogSeparator();this.source.setErrorLog(this.errorLog.toString());JU.Logger.info("NTUPLE MIN/MAX Y = "+e[0]+" "+e[1]);return this.source},"JU.Lst,JSV.source.JDXDataObject,~S");c(c$,"readDataLabel",
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!0;case 40:return a.yFactor=Double.parseDouble(c),!0;case 50:return a.setXUnits(c),!0;case 60:return a.setYUnits(c),!0;case 70:a.setXLabel(c);break;case 80:a.setYLabel(c);break;case 90:return a.numDim=Integer.parseInt(c),!0;case 100:0!=a.shiftRefType&&(1.7976931348623157E308==a.offset&&(a.offset=Double.parseDouble(c)),a.dataPointNum=1,a.shiftRefType=1);break;default:if(17>b.length)break;if(b.equals("##.OBSERVEFREQUENCY "))return a.observedFreq=Double.parseDouble(c),!0;if(b.equals("##.OBSERVENUCLEUS "))return a.setObservedNucleus(c),
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c+"\n"),!0;case 20:return a.origin=null!=c&&!c.equals("")?c:"Unknown",!0;case 30:return a.owner=null!=c&&!c.equals("")?c:"Unknown",!0;case 40:return a.dataType=c,!0;case 50:return a.longDate=c,!0;case 60:return a.date=c,!0;case 70:return a.time=c,!0}return!1},"JSV.source.JDXHeader,~S,~S,JU.SB,~B");c(c$,"setTabularDataType",function(a,b){b.equals("##PEAKASSIGNMENTS")?a.setDataClass("PEAKASSIGNMENTS"):b.equals("##PEAKTABLE")?a.setDataClass("PEAKTABLE"):b.equals("##XYDATA")?a.setDataClass("XYDATA"):
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JSV.common.Coordinate.parseDSV(this.t.getValue(),a.xFactor,a.yFactor):JSV.common.Coordinate.parseDSV(this.t.getValue(),1,1);a.setXYCoords(e);e=JSV.common.Coordinate.deltaX(e[e.length-1].getXVal(),e[0].getXVal(),e.length);a.setIncreasing(0<e);return!0}return!1},"JSV.source.JDXDataObject,JU.Lst");c(c$,"readNTUPLECoords",function(a,b,c,e){var g;if(a.dataClass.equals("XYDATA")){g=b.get("##SYMBOL");var h=g.indexOf(c[0]);c=g.indexOf(c[1]);g=b.get("##VARNAME");a.varName=g.get(c).toUpperCase();g=b.get("##FACTOR");
a.xFactor=Double.parseDouble(g.get(h));a.yFactor=Double.parseDouble(g.get(c));g=b.get("##LAST");a.fileLastX=Double.parseDouble(g.get(h));g=b.get("##FIRST");a.fileFirstX=Double.parseDouble(g.get(h));g=b.get("##VARDIM");a.nPointsFile=Integer.parseInt(g.get(h));g=b.get("##UNITS");a.setXUnits(g.get(h));a.setYUnits(g.get(c));null==a.nucleusX&&null!=(g=b.get("##.NUCLEUS"))?(a.setNucleusAndFreq(g.get(0),!1),a.setNucleusAndFreq(g.get(h),!0)):null==a.nucleusX&&(a.nucleusX="?");this.decompressData(a,e);return!0}return a.dataClass.equals("PEAKTABLE")||
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var g=new JSV.source.JDXDecompressor(this.t,a.fileFirstX,a.xFactor,a.yFactor,e,a.nPointsFile),h=L(2,0),j=System.currentTimeMillis(),k=g.decompressData(this.errorLog,h);JU.Logger.debugging&&JU.Logger.debug("decompression time = "+(System.currentTimeMillis()-j)+" ms");a.setXYCoords(k);j=g.getMinY();null!=b&&(j<b[0]&&(b[0]=j),j=g.getMaxY(),j>b[1]&&(b[1]=j));g=Double.isNaN(a.freq2dX)?a.observedFreq:a.freq2dX;1.7976931348623157E308!=a.offset&&(1.7976931348623157E308!=g&&a.dataType.toUpperCase().contains("SPECTRUM"))&&
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e+"\n"),this.errorLog.append("Number of points in Header "+a.nPointsFile+" Found "+k.length+"\n"));JU.Logger.debugging&&System.err.println(this.errorLog.toString())},"JSV.source.JDXDataObject,~A");c$.addHeader=c(c$,"addHeader",function(a,b,c){for(var e,g=0;g<a.size();g++)if((e=a.get(g))[0].equals(b)){e[1]=c;return}a.addLast(w(-1,[b,c,JSV.source.JDXSourceStreamTokenizer.cleanLabel(b)]))},"JU.Lst,~S,~S");c(c$,"checkCustomTags",function(a,b,c){10<b.length&&(b=b.substring(0,10));null==a?System.out.println(b):
this.modelSpectrum=a;b="##$MODELS ##$PEAKS  ##$SIGNALS##$MOLFILE##PEAKASSI##$UVIRASS##$MSFRAGM".indexOf(b);if(0>b)return!1;this.getMpr().set(this,this.filePath,null);try{switch(this.reader=new java.io.BufferedReader(new java.io.StringReader(c)),b){case 0:this.mpr.readModels();break;case 10:case 20:this.peakData=new JU.Lst;this.source.peakCount+=this.mpr.readPeaks(20==b,this.source.peakCount);break;case 30:this.acdAssignments=new JU.Lst;this.acdMolFile=JU.PT.rep(c,"$$ Empty String","");break;case 40:case 50:case 60:this.acdAssignments=
this.mpr.readACDAssignments(a.nPointsFile,40==b);break}}catch(e){if(y(e,Exception))throw new JSV.exception.JSVException(e.getMessage());throw e;}finally{this.reader=null}return!0},"JSV.common.Spectrum,~S,~S");c(c$,"getMpr",function(){return null==this.mpr?this.mpr=JSV.common.JSViewer.getInterface("J.jsv.JDXMOLParser"):this.mpr});e(c$,"rd",function(){return this.reader.readLine()});e(c$,"setSpectrumPeaks",function(a,b,c){this.modelSpectrum.setPeakList(this.peakData,b,c);this.modelSpectrum.isNMR()&&
this.modelSpectrum.setNHydrogens(a)},"~N,~S,~S");e(c$,"addPeakData",function(a){null==this.peakData&&(this.peakData=new JU.Lst);this.peakData.addLast(new JSV.common.PeakInfo(a))},"~S");e(c$,"processModelData",function(){},"~S,~S,~S,~S,~S,~N,~N,~B");e(c$,"discardLinesUntilContains",function(a){for(var b;null!=(b=this.rd())&&0>b.indexOf(a););return b},"~S");e(c$,"discardLinesUntilContains2",function(a,b){for(var c;null!=(c=this.rd())&&0>c.indexOf(a)&&0>c.indexOf(b););return c},"~S,~S");e(c$,"discardLinesUntilNonBlank",
function(){for(var a;null!=(a=this.rd())&&0==a.trim().length;);return a});D(c$,"VAR_LIST_TABLE",w(-1,["PEAKTABLE   XYDATA      XYPOINTS"," (XY..XY)    (X++(Y..Y)) (XY..XY)    "]),"ERROR_SEPARATOR","=====================\n")});q("JSV.source");r(["JSV.source.JDXHeader"],"JSV.source.JDXSource",["JU.Lst"],function(){c$=p(function(){this.type=0;this.isCompoundSource=!1;this.jdxSpectra=null;this.errors="";this.filePath=null;this.peakCount=0;this.isView=!1;j(this,arguments)},JSV.source,"JDXSource",JSV.source.JDXHeader);
c(c$,"dispose",function(){this.jdxSpectra=this.headerTable=null});m(c$,function(a,b){z(this,JSV.source.JDXSource,[]);this.type=a;this.setFilePath(b);this.headerTable=new JU.Lst;this.jdxSpectra=new JU.Lst;this.isCompoundSource=0!=a},"~N,~S");c(c$,"getJDXSpectrum",function(a){return this.jdxSpectra.size()<=a?null:this.jdxSpectra.get(a)},"~N");c(c$,"addJDXSpectrum",function(a,b,c){null==a&&(a=this.filePath);b.setFilePath(a);a=this.jdxSpectra.size();(0==a||!this.jdxSpectra.get(a-1).addSubSpectrum(b,c))&&
this.jdxSpectra.addLast(b)},"~S,JSV.common.Spectrum,~B");c(c$,"getNumberOfSpectra",function(){return this.jdxSpectra.size()});c(c$,"getSpectra",function(){return this.jdxSpectra});c(c$,"getSpectraAsArray",function(){return null==this.jdxSpectra?null:this.jdxSpectra.toArray()});c(c$,"getErrorLog",function(){return this.errors});c(c$,"setErrorLog",function(a){this.errors=a},"~S");c(c$,"setFilePath",function(a){this.filePath=a},"~S");c(c$,"getFilePath",function(){return this.filePath});c$.createView=
c(c$,"createView",function(a){var b=new JSV.source.JDXSource(-2,"view");b.isView=!0;for(var c=0;c<a.size();c++)b.addJDXSpectrum(a.get(c).getFilePath(),a.get(c),!1);return b},"JU.Lst");c(c$,"getHeaderRowDataAsArray",function(a,b){null==b&&(b=w(0,0,null));for(var c=this.getHeaderRowDataAsArray(a,b.length),e=b.length;0<=--e;)c[c.length-b.length+e]=b[e];return c},"~B,~A");c(c$,"setID",function(a){this.jdxSpectra.get(0).sourceID=a},"~S");c(c$,"matchesFilePath",function(a){return this.filePath.equals(a)||
this.filePath.$replace("\\","/").equals(a)},"~S");D(c$,"TYPE_VIEW",-2,"TYPE_UNKNOWN",-1,"TYPE_SIMPLE",0,"TYPE_BLOCK",1,"TYPE_NTUPLE",2)});q("JSV.source");r(null,"JSV.source.JDXSourceStreamTokenizer",["java.lang.Character","JU.SB","JU.Logger"],function(){c$=p(function(){this.value=this.rawLabel=this.br=null;this.labelLineNo=0;this.line=null;this.lineNo=0;j(this,arguments)},JSV.source,"JDXSourceStreamTokenizer");m(c$,function(a){this.br=a},"java.io.BufferedReader");c(c$,"peakLabel",function(){return this.nextLabel(!1)});
c(c$,"getLabel",function(){return this.nextLabel(!0)});c(c$,"nextLabel",function(a){for(this.value=this.rawLabel=null;null==this.line||0==this.line.length;){try{this.readLine();if(null==this.line)return this.line="",null;this.line=this.line.trim()}catch(b){if(y(b,java.io.IOException))return this.line="",null;throw b;}if(this.line.startsWith("##"))break;this.line=null}var c=this.line.indexOf("=");0>c?(a&&JU.Logger.info("BAD JDX LINE -- no '=' (line "+this.lineNo+"): "+this.line),this.rawLabel=this.line,
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return this.value});c(c$,"readLineTrimmed",function(){this.readLine();if(null==this.line)return null;if(0>this.line.indexOf("$$"))return this.line.trim();var a=(new JU.SB).append(this.line);return JSV.source.JDXSourceStreamTokenizer.trimLines(a)});c(c$,"flushLine",function(){var a=(new JU.SB).append(this.line);this.line=null;return JSV.source.JDXSourceStreamTokenizer.trimLines(a)});c(c$,"readLine",function(){this.line=this.br.readLine();this.lineNo++;return this.line});c$.trimLines=c(c$,"trimLines",
function(a){var b=a.length(),c=b-1,e=JSV.source.JDXSourceStreamTokenizer.ptNonWhite(a,0,b);if(e>=b)return"";for(var g=W(b-e,"\x00"),h=0;e<b;e++){var j;switch(j=a.charAt(e)){case "\r":if(e<c&&"\n"==a.charAt(e+1))continue;j="\n";break;case "\n":0<h&&"\n"!=g[h-1]&&(h-=e-JSV.source.JDXSourceStreamTokenizer.ptNonSpaceRev(a,e)-1);e=JSV.source.JDXSourceStreamTokenizer.ptNonSpace(a,++e,b)-1;break;case "$":if(e<c&&"$"==a.charAt(e+1)){for(e++;++e<b&&0>"\n\r".indexOf(a.charAt(e)););continue}}"\n"==j&&0<h&&"\n"==
g[h-1]||(g[h++]=j)}0<h&&"\n"==g[h-1]&&--h;return String.instantialize(g).substring(0,h).trim()},"JU.SB");c$.ptNonWhite=c(c$,"ptNonWhite",function(a,b,c){for(;b<c&&Character.isWhitespace(a.charAt(b));)b++;return b},"JU.SB,~N,~N");c$.ptNonSpace=c(c$,"ptNonSpace",function(a,b,c){for(;b<c&&(" "==a.charAt(b)||"\t"==a.charAt(b));)b++;return b},"JU.SB,~N,~N");c$.ptNonSpaceRev=c(c$,"ptNonSpaceRev",function(a,b){for(;0<=--b&&(" "==a.charAt(b)||"\t"==a.charAt(b)););return b},"JU.SB,~N")});q("JSV.tree");r(["JSV.api.JSVTree"],
"JSV.tree.SimpleTree",["JSV.common.JSVFileManager","$.PanelNode","JSV.tree.SimpleTreeModel","$.SimpleTreeNode","$.SimpleTreePath"],function(){c$=p(function(){this.selectedPath=this.vwr=this.spectraTreeModel=this.rootNode=this.si=null;j(this,arguments)},JSV.tree,"SimpleTree",null,JSV.api.JSVTree);e(c$,"getRootNode",function(){return this.rootNode});m(c$,function(a){this.vwr=a;this.rootNode=new JSV.tree.SimpleTreeNode("Spectra",null);this.spectraTreeModel=new JSV.tree.SimpleTreeModel(this.rootNode)},
"JSV.common.JSViewer");c(c$,"valueChanged",function(){this.vwr.selectedTreeNode(this.getLastSelectedPathComponent())});c(c$,"getLastSelectedPathComponent",function(){return null==this.selectedPath?null:this.selectedPath.getLastPathComponent()});e(c$,"setSelectedPanel",function(a,b){if(null!=b){var c=JSV.common.PanelNode.findNode(b,this.vwr.panelNodes).treeNode;this.setSelectionPath(this.vwr.spectraTree.newTreePath(c.getPath()))}},"JSV.api.ScriptInterface,JSV.api.JSVPanel");c(c$,"setSelectionPath",
function(a){this.selectedPath=a;this.valueChanged()},"JSV.api.JSVTreePath");e(c$,"createTree",function(a,b,c){var e=this.vwr.spectraTree,g=e.getRootNode(),h=this.vwr.panelNodes,j=JSV.common.JSVFileManager.getTagName(b.getFilePath()),k=new JSV.common.PanelNode(null,j,b,null),l=new JSV.tree.SimpleTreeNode(j,k);k.setTreeNode(l);e.spectraTreeModel.insertNodeInto(l,g,g.getChildCount());for(g=0;g<c.length;g++){var k=new JSV.common.PanelNode(a+"."+(g+1),j,b,c[g]),m=new JSV.tree.SimpleTreeNode(k.toString(),
k);k.setTreeNode(m);h.addLast(k);e.spectraTreeModel.insertNodeInto(m,l,l.getChildCount())}this.vwr.selectFrameNode(c[0]);return l},"~N,JSV.source.JDXSource,~A");e(c$,"setPath",function(a){this.setSelectionPath(a)},"JSV.api.JSVTreePath");c(c$,"newTreePath",function(a){return new JSV.tree.SimpleTreePath(a)},"~A");e(c$,"deleteNodes",function(a){for(var b=0;b<a.size();b++)this.spectraTreeModel.removeNodeFromParent(a.get(b))},"JU.Lst")});q("JSV.tree");r(["java.util.Enumeration"],"JSV.tree.SimpleTreeEnumeration",
null,function(){c$=p(function(){this.node=null;this.pt=0;j(this,arguments)},JSV.tree,"SimpleTreeEnumeration",null,java.util.Enumeration);m(c$,function(a){this.node=a},"JSV.tree.SimpleTreeNode");e(c$,"hasMoreElements",function(){return this.pt<this.node.$children.size()});e(c$,"nextElement",function(){return this.node.$children.get(this.pt++)})});q("JSV.tree");c$=p(function(){this.rootNode=null;j(this,arguments)},JSV.tree,"SimpleTreeModel");m(c$,function(a){this.rootNode=a},"JSV.api.JSVTreeNode");
c(c$,"insertNodeInto",function(a,b,c){b.$children.add(c,a);a.prevNode=b},"JSV.api.JSVTreeNode,JSV.api.JSVTreeNode,~N");c(c$,"removeNodeFromParent",function(a){a.prevNode.$children.removeObj(a)},"JSV.api.JSVTreeNode");q("JSV.tree");r(["JSV.api.JSVTreeNode"],"JSV.tree.SimpleTreeNode",["JU.Lst","JSV.tree.SimpleTreeEnumeration"],function(){c$=p(function(){this.panelNode=null;this.index=0;this.text=this.$children=this.prevNode=null;j(this,arguments)},JSV.tree,"SimpleTreeNode",null,JSV.api.JSVTreeNode);
m(c$,function(a,b){this.text=a;this.panelNode=b;this.$children=new JU.Lst},"~S,JSV.common.PanelNode");e(c$,"getPanelNode",function(){return this.panelNode});e(c$,"getIndex",function(){return this.index});e(c$,"setIndex",function(a){this.index=a},"~N");e(c$,"children",function(){return new JSV.tree.SimpleTreeEnumeration(this)});e(c$,"getChildCount",function(){return this.$children.size()});e(c$,"getPath",function(){var a=new JU.Lst,b=this;for(a.addLast(b);null!=(b=b.prevNode);)a.add(0,b);return a.toArray()});
e(c$,"isLeaf",function(){return null!=this.prevNode&&null!=this.prevNode.prevNode});e(c$,"toString",function(){return this.text})});q("JSV.tree");r(["JSV.api.JSVTreePath"],"JSV.tree.SimpleTreePath",null,function(){c$=p(function(){this.path=null;j(this,arguments)},JSV.tree,"SimpleTreePath",null,JSV.api.JSVTreePath);m(c$,function(a){this.path=a},"~A");e(c$,"getLastPathComponent",function(){return null==this.path||0==this.path.length?null:this.path[this.path.length-1]})})}U._coreLoaded=!0})(Clazz,Clazz.getClassName,
Clazz.newLongArray,Clazz.doubleToByte,Clazz.doubleToInt,Clazz.doubleToLong,Clazz.declarePackage,Clazz.instanceOf,Clazz.load,Clazz.instantialize,Clazz.decorateAsClass,Clazz.floatToInt,Clazz.floatToLong,Clazz.makeConstructor,Clazz.defineEnumConstant,Clazz.exceptionOf,Clazz.newIntArray,Clazz.defineStatics,Clazz.newFloatArray,Clazz.declareType,Clazz.prepareFields,Clazz.superConstructor,Clazz.newByteArray,Clazz.declareInterface,Clazz.p0p,Clazz.pu$h,Clazz.newShortArray,Clazz.innerTypeInstance,Clazz.isClassDefined,
Clazz.prepareCallback,Clazz.newArray,Clazz.castNullAs,Clazz.floatToShort,Clazz.superCall,Clazz.decorateAsType,Clazz.newBooleanArray,Clazz.newCharArray,Clazz.implementOf,Clazz.newDoubleArray,Clazz.overrideConstructor,Clazz.clone,Clazz.doubleToShort,Clazz.getInheritedLevel,Clazz.getParamsType,Clazz.isAF,Clazz.isAB,Clazz.isAI,Clazz.isAS,Clazz.isASS,Clazz.isAP,Clazz.isAFloat,Clazz.isAII,Clazz.isAFF,Clazz.isAFFF,Clazz.tryToSearchAndExecute,Clazz.getStackTrace,Clazz.inheritArgs,Clazz.alert,Clazz.defineMethod,
Clazz.overrideMethod,Clazz.declareAnonymous,Clazz.cloneFinals);
